GECO Génomique Computationnelle et Evolutive

Enhanced tetrazolium violet reduction of Salmonella spp. by magnesium addition to the culture media

T. Junillon, L. Morand, Jean-Pierre Flandrois

Food Microbiology . 42 : 132-135

2014

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Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

Hemalatha Golaconda Ramulu, Mathieu Groussin, Emmanuel Talla, Rémi Planel, Vincent Daubin, Céline Brochier-Armanet

Molecular Phylogenetics and Evolution . 75 : 103 - 117

DOI: 10.1016/j.ympev.2014.02.013

2014

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Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.

Nadia Khelifi, Oulfat Amin Ali, Philippe Roche, Vincent Grossi, Céline Brochier-Armanet, Odile Valette...

The International Society of Microbiologial Ecology Journal . : 18

DOI: 10.1038/ismej.2014.58

2014

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Halomonas olivaria sp. nov., a moderately halophilic bacterium isolated from olive-processing effluents

A. Amouric, Pierre-Pol Liebgott, M. Joseph, Céline Brochier-Armanet, J. Lorquin

International Journal of Systematic and Evolutionary Microbiology . 64 ( Pt 1 ) : 46 - 54

DOI: 10.1099/ijs.0.049007-0

2014

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Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.

Kasie Raymann, Patrick Forterre, Céline Brochier-Armanet, Simonetta Gribaldo

Genome Biology and Evolution . 6 ( 1 ) : 192-212

DOI: 10.1093/gbe/evu004

2014

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“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

Marc Bailly-Bechet, Annabelle Haudry, Emmanuelle Lerat

Mobile DNA . 5 : 13

DOI: 10.1186/1759-8753-5-13

2014

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Dioecy is associated with higher diversification rates in flowering plants

Jos Käfer, Hugo J de Boer, Sylvain Mousset, Anneleen Kool, Mathilde Dufaÿ, Gabriel A.B. Marais

Journal of Evolutionary Biology . 27 : 1478-1490

DOI: 10.1111/jeb.12385

2014

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Reductive genome evolution at both ends of bacterial population size spectrum

Bérénice Batut, Carole Knibbe, Gabriel Marais, Vincent Daubin

Nature Reviews Microbiology . 12 ( 12 ) : 841-850

DOI: 10.1038/nrmicro3331

2014

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Identification and Analysis of Transposable Elements in Genomic Sequences

Laurent Modolo, Emmanuelle Lerat

Genome analysis, current procedures and applications . 978-1-908230-29-4

2014

Chapitre d'ouvrage

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Formation of chromosome in bacteria

Olivier Poirion, Bénédicte Lafay

FEBS-EMBO 2014 Conference .

2014

Acte de congrès

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A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Sophia S. Ahmed, J. Mark Cock, Eugenie Pessia, Remy Luthringer, Alexandre Cormier, Marine Robuchon...

Current Biology . 24 ( 17 ) : 1945-1957

DOI: 10.1016/j.cub.2014.07.042

2014

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Sex uncovered: the evolutionary biology of reproductive systems

T. Schwander, Gabriel Marais, D. Roze

Journal of Evolutionary Biology . 27 : 1287-91

2014

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Amortized Õ(|V|) -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs

Rui Ferreira, Roberto Grossi, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot

22th Annual European Symposium on Algorithms . 8737 : 418-429

DOI: 10.1007/978-3-662-44777-2_35

2014

Acte de congrès

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Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids

Elias a G Carnelossi, Emmanuelle Lerat, Hélène Henri, Sonia Martinez, Claudia M A Carareto, Cristina Vieira

Genome Biology and Evolution . 6 : 1806 - 1817

DOI: 10.1093/gbe/evu141

2014

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GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance

Y. Lesecque, D. Mouchiroud, L. Duret

Molecular Biology and Evolution . 30 : 1409--19

DOI: 10.1093/molbev/mst056

2013

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XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells

C. Vallot, C. Huret, Yann Lesecque, A. Resch, N. Oudrhiri, A. Bennaceur-Griscelli...

Nature Genetics . 45 : 239--41

DOI: 10.1038/ng.2530

2013

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The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

S. B. Montgomery, D. L. Goode, E. Kvikstad, C. A. Albers, Z. D. Zhang, X. J. Mu...

Genome Research . 23 : 749--61

DOI: 10.1101/gr.148718.112

2013

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PCR survey of 50 introns in animals: Cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla

K. Gerard, E. Guilloton, S. Arnaud-Haond, Didier Aurelle, R. Bastrop, Pierre Chevaldonné...

Marine Genomics . 12 : 1-8

DOI: 10.1016/j.margen.2013.10.001

2013

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The short-term impact of wetland restoration on the genetic diversity of a predominantly clonal plant species

Jehanne Oudot-Canaff, Gudrun Bornette, Marie-Rose Viricel, Florence Piola, Sylvain Mousset, Evelyne Martel

Aquatic Botany . 110 : 16-23

DOI: 10.1016/j.aquabot.2013.04.006

2013

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Ancient Substructure in Early mtDNA Lineages of Southern Africa

Chiara Barbieri, Mário Vicente, Jorge Rocha, Sununguko w. Mpoloka, Mark Stoneking, Brigitte Pakendorf

American Journal of Human Genetics . 92 ( 2 ) : 285-292

DOI: 10.1016/j.ajhg.2012.12.010

2013

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Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

Carina Mugal, Benoit Nabholz, Hans Ellegren

BMC Genomics . 14 ( 1 ) : 86

DOI: 10.1186/1471-2164-14-86

2013

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Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

Carina Mugal, Peter Arndt, Hans Ellegren

Molecular Biology and Evolution . 30 ( 7 ) : 1700-1712

DOI: 10.1093/molbev/mst067

2013

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Elementary Flux Modes Analysis of Functional Domain Networks Allows a Better Metabolic Pathway Interpretation

Sabine Pérès, Liza L. Felicori, Franck Molina

PLoS ONE . 8 ( 10 )

DOI: 10.1371/journal.pone.0076143

2013

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Analysis of metabolic networks using elementary flux modes

Sabine Pérès

Advances in systems and synthetic biology . : 165--170

2013

Acte de congrès

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Human Genetic Data Reveal Contrasting Demographic Patterns between Sedentary and Nomadic Populations That Predate the Emergence of Farming

Carla Aimé, Guillaume Laval, Etienne Patin, Paul Verdu, Laure L. Segurel, Raphaëlle Chaix...

Molecular Biology and Evolution . 30 ( 12 ) : 2629 - 2644

DOI: 10.1093/molbev/mst156

2013

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Ancestry runs deeper than blood: The evolutionary history of ABO points to cryptic variation of functional importance

Laure L. Segurel, Ziyue Gao, Molly Przeworski

BioEssays . : n/a-n/a

DOI: 10.1002/bies.201300030

2013

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Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees

E. Leffler, Z. Gao, S. Pfeifer, L. Segurel, A. Auton, O. Venn...

Science . 339 ( 6127 ) : 1578-1582

DOI: 10.1126/science.1234070

2013

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Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia

Laure Ségurel, Frédéric Austerlitz, Bruno Toupance, Mathieu M. Gautier, Joanna L Kelley, Patrick Pasquet...

European Journal of Human Genetics . 21 ( 10 ) : 1146-1151

DOI: 10.1038/ejhg.2012.295

2013

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The complex binding of PRDM9

Laure Ségurel

Genome Biology . 14 ( 4 ) : 112

DOI: 10.1186/gb-2013-14-4-112

2013

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Eloge de l'ADN poubelle

Laurent Duret, Sylvain Charlat

Pour la science . 81 : 10--17

2013

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GECO Génomique Computationnelle et Evolutive

Equipe Bioinformatique, Phylogénie et Génomique Évolutive

Equipe Baobab

Publications

Enhanced tetrazolium violet reduction of Salmonella spp. by magnesium addition to the culture media

Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.

Halomonas olivaria sp. nov., a moderately halophilic bacterium isolated from olive-processing effluents

Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.

“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

Dioecy is associated with higher diversification rates in flowering plants

Reductive genome evolution at both ends of bacterial population size spectrum

Identification and Analysis of Transposable Elements in Genomic Sequences

Formation of chromosome in bacteria

A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Sex uncovered: the evolutionary biology of reproductive systems

Amortized Õ(|V|) -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs

Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids

GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance

XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

PCR survey of 50 introns in animals: Cross-amplification of homologous EPIC loci in eight non-bilaterian, protostome and deuterostome phyla

The short-term impact of wetland restoration on the genetic diversity of a predominantly clonal plant species

Ancient Substructure in Early mtDNA Lineages of Southern Africa

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

Twisted Signatures of GC-Biased Gene Conversion Embedded in an Evolutionary Stable Karyotype

Elementary Flux Modes Analysis of Functional Domain Networks Allows a Better Metabolic Pathway Interpretation

Analysis of metabolic networks using elementary flux modes

Human Genetic Data Reveal Contrasting Demographic Patterns between Sedentary and Nomadic Populations That Predate the Emergence of Farming

Ancestry runs deeper than blood: The evolutionary history of ABO points to cryptic variation of functional importance

Multiple Instances of Ancient Balancing Selection Shared Between Humans and Chimpanzees

Positive selection of protective variants for type 2 diabetes from the Neolithic onward: a case study in Central Asia

The complex binding of PRDM9

Eloge de l'ADN poubelle