GECO Evolutionary and Computational Genomics

Baobab Group

Lacroix Vincent

Maître de conférences

UCBL

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 43 15 52

Email

Publications

Display of 31 to 60 publications on 61 in total

Analysis of RNA Transcripts by High-Throughput RNA Sequencing

Paolo Ribeca, Vincent Lacroix, Michael Sammeth, Roderic Guigó

Alternative pre-mRNA Splicing: Theory and Protocols . 9783527636778

DOI: 10.1002/9783527636778.ch50

Book chapter

see the publication

Exploration of the core metabolism of symbiotic bacteria

Cecilia Coimbra Klein, Ludovic Cottret, Janice Kielbassa, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos...

BMC Genomics . 13 ( 1 ) : 438

DOI: 10.1186/1471-2164-13-438

Journal article

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ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data.

Milana Frenkel-Morgenstern, Alessandro Gorohovski, Vincent Lacroix, Mark Rogers, Kristina Ibanez, Cesar Boullosa...

Nucleic Acids Research . 41 ( D1 ) : D142-D151

DOI: 10.1093/nar/gks1041

Journal article

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Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts.

Milana Frenkel-Morgenstern, Vincent Lacroix, Iakes Ezkurdia, Yishai Levin, Alexandra Gabashvili, Jaime Prilusky...

Genome Research . 22 ( 7 ) : 1231-1242

DOI: 10.1101/gr.130062.111

Journal article

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Evidence for transcript networks composed of chimeric RNAs in human cells

Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M. Mudge...

PLoS ONE . 7 ( 1 ) : Non paginé

DOI: 10.1371/journal.pone.0028213

Journal article

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Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M. Mudge...

PLoS ONE . 7 : 1-22

Journal article

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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix...

Theoretical Computer Science . 457 : 1--9

DOI: 10.1016/j.tcs.2012.07.023

Journal article

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RNA-seq without a reference genome: a comparison of the mapping and the assembly approaches

M.-C. Carpentier, J. Charif, Vincent Lacroix, Marie-France Sagot, Fabrice Vavre

JOBIM .

Conference paper

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kisSplice, détection d'évènements d'épissages alternatifs dans les données RNA-seq

Gustavo Akio Tominaga Sacomoto, J. Kielbassa, Pavlos Antoniou, Rayan Chikhi, Raluca Uricaru, Marie-France Sagot...

: 12

Report

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Metabolic network comparison of bacteria in the context of symbiosis

Cecilia C. Klein, Ludovic Cottret, Hubert Charles, Christian Gautier, Ana T Vasconcelos, Vincent Lacroix...

Otto Warburg International Summer School and Research Symposium on Evolutionary Genomics .

Conference paper

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Telling Stories

Vicente Acuña, Etienne Birmele, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix...

ICALP 2011 satellite workshop: Graph Algorithms and Applications (GA) .

DOI: 10.1016/j.tcs.2012.07.023

Conference paper

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Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

Amélie Véron, Claire Lemaitre, Christian Gautier, Vincent Lacroix, Marie-France Sagot

BMC Genomics . 12 ( 1 ) : 303

DOI: 10.1186/1471-2164-12-303

Journal article

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NGS without a reference genome, comparison and visualisation of non assembled data

Vincent Lacroix

Statistical Methods for Post-Genomic Data (SMPGD) .

Conference paper

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Absence of a core metabolic network common to symbiotic bacteria

Cecilia Coimbra Klein, Ludovic Cottret, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix...

6. Meeting GDRE-RA Comparative genomics . : 33 diapositives

Conference paper

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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms

Paulo Vieira Milreu, Vicente Acuña, Etienne E. Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot...

Algorithms in Bioinformatics . 6293 : 226-237

DOI: 10.1007/978-3-642-15294-8_19

Conference paper

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Identifying SNPs without a reference genome by comparing raw reads

Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, Marie-France Sagot, Vincent Lacroix

String Processing and Information Retrieval . 6393 : 147-158

DOI: 10.1007/978-3-642-16321-0_14

Conference paper

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Assessing the exceptionality of coloured motifs in networks

Sophie S. Schbath, Vincent Lacroix, Marie-France Sagot

EURASIP Journal on Bioinformatics and Systems Biology . 2009 : 9 pages on line

DOI: 10.1155/2009/616234

Journal article

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Modes and Cuts in Metabolic Networks:Complexity and Algorithms

Vicente Acuna, F. Chierichetti, Vincent Lacroix, A. Marchetti-Spaccamela, M.-F. Sagot, L. Stougie

BioSystems . 95 - n°1 : 51-60

Journal article

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Identification de motifs dans les réseaux métaboliques

Vincent Lacroix

incollection . -- : D1-D5

Journal article

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An introduction to metabolic networks and their structural analysis.

Vincent Lacroix, Ludovic Cottret, Patricia Thebault, Marie-France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 5 ( 4 ) : 594-617

DOI: 10.1109/TCBB.2008.79

Journal article

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Exact Transcriptome Reconstruction from Short Sequence Reads

Vincent Lacroix, M. Sammeth, R. Guigo, A. Bergeron

International Workshop on Algorithms in Bioinformatics (WABI) . 5251 : 50-63

DOI: 10.1007/978-3-540-87361-7_5

Conference paper

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Identification de motifs dans les réseaux métaboliques : définitions algorithmes et application au métabolisme d’Escherichia coli

Vincent Lacroix

Edilivre . 978-2-35607-642-7

Book

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Metabolic network visualization eliminating node redundance and preserving metabolic pathways

Romain Bourqui, L. Cottret, Vincent Lacroix, D. Auber, P. Mary, M.-F. Sagot...

BMC Biology . 1 - n°29 : 1-19

DOI: 10.1186/1752-0509-1-29

Journal article

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Identification de motifs dans les réseaux métaboliques

Vincent Lacroix

Thesis

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Uncovering structure in biological networks

J.J. Daudin, Vincent Lacroix, M. Mariadassou, V. Miele, Franck Picard, S. Robin...

incollection . -- : 471-483

Journal article

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Motif search in graphs: application to metabolic networks.

Vincent Lacroix, C.G. Fernandes, M.-F. Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 3 - n°4 : 360-368

Journal article

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Metabolic network visualization using constraint planar graph drawing Algorithm

Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan

Metabolic network visualization using constraint planar graph drawing Algorithm . : 489 - 496

Conference paper

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Metabolic network visualization using constraint planar graph drawing algorithm

Romain Bourqui, D. Auber, Vincent Lacroix, F. Jourdan

incollection . -- : 489-496

Journal article

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Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques

Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan

Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques . : électronique

Conference paper

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Reaction Motifs in Metabolic Networks

Vincent Lacroix, Cristina Gomes Fernandes, Marie-France Sagot

: 14

Report

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