GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Lafay Bénédicte

Chargée de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 44 85 60

Email

Publications

Display of 1 to 30 publications on 62 in total

Bradyrhizobium hardenbergiae sp. nov., isolated from Hardenbergia violacea in Australia, represents a novel basal lineage of the B. elkanii supergroup

Bénédicte Lafay, Elina Coquery, Phil M. Oger

Preprint

see the publication

Bradyrhizobium commune sp. nov., isolated from nodules of a wide range of native legumes across the Australian continent

Bénédicte Lafay, Elina Coquery, Phil M. Oger

International Journal of Systematic and Evolutionary Microbiology . 73 ( 7 ) : 005971

DOI: 10.1099/ijsem.0.005971

Journal article

see the publication

Complete genome of Bradyrhizobium sp. strain BDV5419, representative of Australian genospecies L

Christine Oger-Desfeux, Jerome Briolay, Phil M. Oger, Bénédicte Lafay

Microbiology Resource Announcements . 10 ( 8 ) : e00042-21

DOI: 10.1128/MRA.00042-21

Journal article

see the publication

Complete Genome Sequence of Bradyrhizobium sp. Strain BDV5040, Representative of Widespread Genospecies B in Australia

Christine Oger-Desfeux, Jérôme Briolay, Phil M. Oger, Bénédicte Lafay

Microbiology Resource Announcements . 10 ( 3 ) : e01326-20

DOI: 10.1128/MRA.01326-20

Journal article

see the publication

Metapopulation ecology links antibiotic resistance, consumption, and patient transfers in a network of hospital wards

Julie Teresa Shapiro, Gilles Leboucher, Anne-Florence Myard-Dury, Pascale Girardo, Anatole Luzzati, Mélissa Mary...

eLife . 9

DOI: 10.7554/eLife.54795

Journal article

see the publication

Metapopulation ecology links antibiotic resistance, consumption and patient transfers in a network of hospital wards.

Julie Teresa Shapiro, Gilles Leboucher, Anne-Florence Myard-Dury, Pascale Girardo, Anatole Luzatti, Mélissa Mary...

DOI: 10.1101/771790

Preprint

see the publication

P2857 Quantifying drivers of antimicrobial resistance in a large network of hospital wards: a meta-population approach.

Julie Teresa Shapiro, Leboucher Gilles, Anatole Luzzati, Jean Francois Sauzon, Olivier Dauwalder, Pascale Girardo...

29TH ECCMID .

Conference paper

see the publication

Ail and PagC-Related Proteins in the Entomopathogenic Bacteria of Photorhabdus Genus

Annabelle Mouammine, Anne Lanois, Sylvie Pages, Bénédicte Lafay, Virginie Molle, Marc Canova...

PLoS ONE . 9 ( 10 ) : e110060

DOI: 10.1371/journal.pone.0110060

Journal article

see the publication

Contribution of graphs to the analysis of bacterial genome architecture

Olivier Poirion, Bénédicte Lafay

BioNetVisA workshop, ECCB'14, the 13th European Conference on Computational Biology .

Conference paper

see the publication

Structuration of the bacterial replicon space

Olivier Poirion, Bénédicte Lafay

ECCB'14 . CD

Conference paper

see the publication

Chromosome formation in bacteria

Olivier Poirion, Bénédicte Lafay

EMBO Conference "Microbiology after the genomics revolution : Genomes 2014" .

Conference paper

see the publication

Formation of chromosome in bacteria

Olivier Poirion, Bénédicte Lafay

FEBS-EMBO 2014 Conference .

Conference paper

see the publication

Utilization of Machine-Learning Methodologies in Order to Understand Complex Evolutionary and Functional Links among Bacterial Genomes

Olivier Poirion, Bénédicte Lafay

IFCS2013 Book of abstracts . : p. 203

Conference paper

see the publication

Tracing the origin of megaplasmids and secondary chromosomes in bacterial genomes

Olivier Poirion, Laurent Krähenbühl, Bénédicte Lafay

SBME . : A049 363

Conference paper

see the publication

Visualization and analysis of an interconnected network of genomic elements

Olivier Poirion, Bénédicte Lafay

AdO'13: Apprentissage et données Omiques - Atelier de la conférence d'apprentissage Francophone CAp'13 - PFIA 2013 8ème Plate-Forme Intelligence Artificielle . : AdO-13_paper_6

Conference paper

see the publication

Classification of bacterial replicons based on the Genetic Information Transmission Systems

Olivier Poirion, Bénédicte Lafay

11th RECOMB - Comparative Genomics 2013 .

Conference paper

see the publication

Primate evolutionary history contribution to the deciphering of SIV/HIV origin and diversification

Bénédicte Lafay

Evolution Ottawa - 1th Joint Congress on Evolutionary Biology .

Conference paper

see the publication

Full-Length Genome Characterization of a Novel Simian Immunodeficiency Virus Lineage (SIVolc) from Olive Colobus (Procolobus verus) and New SIVwrcPbb Strains from Western Red Colobus (Piliocolobus badius badius) from the Taï Forest in Ivory Coast

Florian Liegeois, Bénédicte Lafay, Pierre Formenty, Sabrina Locatelli, Valérie Courgnaud, Eric Delaporte...

Journal of Virology . 83 ( 1 ) : 428-439

DOI: 10.1128/JVI.01725-08

Journal article

see the publication

Quantitative predictions for DNA two-dimensional display according to size and nucleotide sequence composition

Jean-François Mercier, Christine Kingsburry, Gary W. Slater, Bénédicte Lafay

Electrophoresis . 29 ( 6 ) : 1264 - 1272

DOI: 10.1002/elps.200700407

Journal article

see the publication

Exploring the FL-160-CRP gene family through sequence variability of the complement regulatory protein (CRP) expressed by the trypomastigote stage of Trypanosoma cruzi.

Françoise Mathieu-Daudé, Bénédicte Lafay, Olivia Touzet, Joël Lelièvre, Favio Parrado, Marie-France Bosseno...

Infection, Genetics and Evolution . 8 ( 3 ) : 258-66

DOI: 10.1016/j.meegid.2007.12.010

Journal article

see the publication

Sequence variability and phylogenetic analyses of the Complement Regulatory Protein expressed by the trypomastigote stage of Trypanosoma cruzi identify a monophyletic group of CRP-like proteins

Françoise Mathieu-Daudé, Bénédicte Lafay, Olivia Touzet, Marie-France Bosseno, Favio Parrado, Ana Maria Rojas...

Xth European Multicolloquium of Parasitology .

Conference paper

see the publication

Full molecular characterization of a simian immunodeficiency virus, SIVwrcpbt from Temminck's red colobus (Piliocolobus badius temminckii) from Abuko Nature Reserve, The Gambia

Sabrina Locatelli, Bénédicte Lafay, Florian Liegeois, Nelson Ting, Eric Delaporte, Martine Peeters

Virology . 376 ( 1 ) : 90-100

DOI: 10.1016/j.virol.2008.01.049

Journal article

see the publication

Prevalence and genetic diversity of simian immunodeficiency virus infection in wild-living red colobus monkeys (Piliocolobus badius badius) from the Taï forest, Côte d'Ivoire SIVwrc in wild-living western red colobus monkeys.

Sabrina Locatelli, Florian Liegeois, Bénédicte Lafay, Amy D Roeder, Michael W Bruford, Pierre Formenty...

Infection, Genetics and Evolution . 8 ( 1 ) : 1-14

DOI: 10.1016/j.meegid.2007.08.004

Journal article

see the publication

Identification and molecular characterization of new STLV-1 and STLV-3 strains in wild-caught nonhuman primates in Cameroon

Florian Liegeois, Bénédicte Lafay, William M. Switzer, Sabrina Locatelli, Eitel Mpoudi-Ngolé, Severin Loul...

Virology . 371 ( 2 ) : 405-417

DOI: 10.1016/j.virol.2007.09.037

Journal article

see the publication

Molecular diversity of legume root-nodule bacteria in Kakadu National Park, Northern Territory, Australia.

Bénédicte Lafay, Jeremy J Burdon

PLoS ONE . 2 ( 3 ) : e277

DOI: 10.1371/journal.pone.0000277

Journal article

see the publication

Predictions for whole genome 2D display according to size and sequence composition

Bénédicte Lafay, Jean-François Mercier, Christine Kingsburry, Gary W. Slater

3rd SCOPE meeting on Microbial Environmental Genomics (MicroEnGenIII ) .

Conference paper

see the publication

Genetic diversity and phylogeographic clustering of SIVcpzPtt in wild chimpanzees in Cameroon.

Fran van Heuverswyn, Yingying Li, Elizabeth Bailes, Cecile Neel, Bénédicte Lafay, Brandon F Keele...

Virology . 368 ( 1 ) : 155-71

DOI: 10.1016/j.virol.2007.06.018

Journal article

see the publication

Prevalence and genetic diversity of simian immunodeficiency virus infection in wild red colobus Monkeys (Piliocolobus badius badius) from the Taï Forest, Côte d'Ivoire

Sabrina Locatelli, Florian Liegeois, Bénédicte Lafay, Amy D Roeder, M. W. Bruford, Pierre Formenty...

2nd Congress of the European Federation of Primatology .

Conference paper

see the publication