COEVOL Multi-Scale Coevolution

The Cocoon Group

Tannier Eric

Directeur de recherche

INRIA

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 26 23 44 74

Email

 

Researcher in future studies, specializing in the links between science and society

(after research in mathematics, computer science, biology, history, and teaching research ethics)


Research environments :

- Inria, Semis team

- Botascopia (supported by the ANR Sciences avec et pour la société, “Flores”, by the ANR “Flowers”, and by the PEPR “Agroécologie et Numérique”, Cobreeding project)

- Evoluthon (supported by ANR Evoluthon)

- Santé commune, supported by Shapemed


Teaching :

- Video Research Ethics course (Masters and PhD), Video 1 and Video 2, Scientific Integrity Part 1, Part 2, Part 3

- Research Ethics in slides


Conferences and workshops :

- The role of research in the Anthropocene (open university)

- The rebound effects of bioinformatics (M2, research seminar)

- Re-appropriating knowledge production and available intellectual property tools

- Places of anticipation

- The disappearance of technology and conviviality

- Science, Environment and Society Workshop

- Doctoral oaths workshops


Responsibilities - Presentations :

- Head of the Inria Semis team

- Member of the scientific committee of the Boutique des Sciences

- Co-founder and editor of Peer Community in Mathematical and Computational Biology

- Member of the “Formation spécialisée de site” of the Inria Lyon center, committee dedicated to working conditions

- Fabrique des Questions Simples, laboratory incubator for research into the Anthropocene

- Scientific advice for the game “empreinte du numérique” by l'arbre des connaissances

 

Publications

Display of 61 to 90 publications on 123 in total

Lateral Gene Transfer from the Dead.

Gergely J Szöllosi, Eric Tannier, Nicolas Lartillot, Vincent Daubin

Systematic Biology . 62 ( 3 ) : 386-397

DOI: 10.1093/sysbio/syt003

Journal article

see the publication

The genome of the medieval Black Death agent (extended abstract)

Ashok Rajaraman, Eric Tannier, Cedric Chauve

Preprint

see the publication

Lateral gene transfer, rearrangement, reconciliation

Murray Patterson, Gergely Szöllősi, Vincent Daubin, Eric Tannier

BMC Bioinformatics . 14 ( Suppl 15 ) : S4

Journal article

see the publication

Gene tree correction guided by orthology

Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk

BMC Bioinformatics . 14 ( Suppl 15 ) : S5

Journal article

see the publication

Efficient Exploration of the Space of Reconciled Gene Trees.

Gergely J Szöllosi, Wojciech Rosikiewicz, Bastien Boussau, Eric Tannier, Vincent Daubin

Systematic Biology . 62 ( 6 ) : 901-912

DOI: 10.1093/sysbio/syt054

Journal article

see the publication

Genome-scale coestimation of species and gene trees.

Bastien Boussau, Gergely J Szöllosi, L. Duret, Manolo Gouy, Eric Tannier, Vincent Daubin

Genome Research . 23 ( 2 ) : 323-330

DOI: 10.1101/gr.141978.112

Journal article

see the publication

Models and Algorithms for Genome Evolution

Cedric Chauve, Nadia El-Mabrouk, Eric Tannier

978-1-4471-5297-2 : 318

Book

see the publication

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations.

Gergely J Szöllosi, Bastien Boussau, Sophie S Abby, Eric Tannier, Vincent Daubin

Proceedings of the National Academy of Sciences of the United States of America . 109 ( 43 ) : 17513-17518

DOI: 10.1073/pnas.1202997109

Journal article

see the publication

Preserving Inversion Phylogeny Reconstruction

Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier

WABI 2012 - 12th International Workshop on Algorithms in Bioinformatics . : 1-13

DOI: 10.1007/978-3-642-33122-0_1

Conference paper

see the publication

Linearization of ancestral multichromosomal genomes

Ján Maňuch, Murray Patterson, Roland Wittler, Cedric Chauve, Eric Tannier

BMC Bioinformatics . 13 ( Suppl 19 ) : S11

DOI: 10.1186/1471-2105-13-S19-S11

Journal article

see the publication

Evolution of gene neighborhoods within reconciled phylogenies

Sèverine Bérard, Coralie Gallien, Bastien Boussau, Gergely J Szöllosi, Vincent Daubin, Eric Tannier

Bioinformatics . 28 ( 18 ) : i382-i388

DOI: 10.1093/bioinformatics/bts374

Journal article

see the publication

Lateral gene transfer as a support for the tree of life.

Sophie S Abby, Eric Tannier, Manolo Gouy, Vincent Daubin

Proceedings of the National Academy of Sciences of the United States of America . 109 ( 13 ) : 4962-4967

DOI: 10.1073/pnas.1116871109

Journal article

see the publication

HDR - Evolution combinatoire Algorithmique des chromosomes

Eric Tannier

incollection . -- : 54-56

Journal article

see the publication

Preface : Satellite Workshop on Comparative Genomics Research in Computational Molecular Biology (RECOMB-CG 2010)

Eric Tannier

Journal of Computational Biology . 18(9) : 1-3

Journal article

see the publication

Mapping ancestral genomes with massive gene loss: a matrix sandwich problem.

Haris Gavranović, Cedric Chauve, Jérôme Salse, Eric Tannier

Bioinformatics . 27 ( 13 ) : i257-65

DOI: 10.1093/bioinformatics/btr224

Journal article

see the publication

L'époque romantique contre la peine de mort

Eric Tannier

incollection . -- : 54-56

Journal article

see the publication

Evolution Combinatoire, Algorithmique des Chromosomes

Eric Tannier

HDR

see the publication

L'époque romantique contre la peine de mort

Eric Tannier

978-613-1-56487-1 : 176

Book

see the publication

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent Daubin

BMC Bioinformatics . 11 ( 324 ) : 13

DOI: 10.1186/1471-2105-11-324

Journal article

see the publication

Le génome aux ordres des mathématiciens

Eric Tannier

La Recherche . 439 : 54-56

Journal article

see the publication

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Florent Murat, Jian-Hong Xu, Eric Tannier, Michael Abrouk, Nicolas Guilhot, Caroline Pont...

Genome Research . 20 ( 11 ) : 1545-57

DOI: 10.1101/gr.109744.110

Journal article

see the publication

Yeast ancestral genome reconstructions: the possibilities of computational methods II.

Cedric Chauve, Haris Gavranovic, Aida Ouangraoua, Eric Tannier

Journal of Computational Biology . 17 ( 9 ) : 1097-112

DOI: 10.1089/cmb.2010.0092

Journal article

see the publication

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Michael Abrouk, Florent Murat, Caroline Pont, Joachim Messing, Scott Jackson, Thomas Faraut...

Trends in Plant Science . 15 ( 9 ) : 479-87

DOI: 10.1016/j.tplants.2010.06.001

Journal article

see the publication

Comparative genomics : international workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010 : proceedings

Eric Tannier

International Workshop on Comparative Genomics . 978-3-642-16180-3

see the publication

RECOMB Satellite Workshop on Comparative Genomics

Eric Tannier

8. Annual RECOMB Satellite Workshop on Comparative Genomics . 978-3-642-16181-0 : 303

see the publication