Evolutionary Ecology

Quantitative and Evolutionary Ecology of Communities Group

Thioulouse Jean

Directeur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 43 27 56

Site internet

Email

Mendel Building, 1st floor. Office 11.048

Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/

Reproducible research : A series of paper with graphs and computations reproducibility:

https://jthome.thioulouse.fr/Reproducible_Research/

https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/

Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO

ORCID ID: https://orcid.org/0000-0001-7664-05980

IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse

ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1

Evol. Biol. 2021 paper reproducibility:

Overcoming the Spurious Groups Problem in Between-Group PCA

Research activity

My research activities are centred  around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.

The ade4 package for R :ade4

The adegraphics package for R :adegraphics

The ade4TkGUI package for R :ade4TkGUI

 

Publications

Display of 1 to 30 publications on 168 in total

ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Stéphane Dray, Anne-Béatrice Dufour, Jean Thioulouse, Aurélie Siberchicot, Thibaut Jombart, Sandrine Pavoine...

Software

see the publication

Using Partial Triadic Analysis (PTA) to Assess Spatiotemporal Variation in Water Quality

Noura Slimani, Eric Guilbert, David Sánchez-Fernández, Moncef Boumaïza, Malika Trabelsi-Ayadi, Kais Nahdi...

Recent Advances in Environmental Science from the Euro-Mediterranean and Surrounding Regions (4th Edition) . 978-3-031-51903-1 : 1063-1066

DOI: 10.1007/978-3-031-51904-8_231

Conference paper

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Unravelling the environmental correlates influencing the seasonal biodiversity of aquatic Heteropteran assemblages in northern Africa

Noura Slimani, Eric Guilbert, James White, Matthew Hill, Paul Wood, Moncef Boumaïza...

Limnologica . : 126021

DOI: 10.1016/j.limno.2022.126021

Journal article

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Small-Scale Variability in Bacterial Community Structure in Different Soil Types

Mylène Hugoni, Naoise Nunan, Jean Thioulouse, Audrey Dubost, Danis Abrouk, Jean M.F. Martins...

Microbial ecology . 82 ( 2 ) : 470-483

DOI: 10.1007/s00248-020-01660-0

Journal article

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Water Quality Shapes Freshwater Macroinvertebrate Communities in Northern Tunisia

Noura Slimani, David Sánchez-Fernández, Eric Guilbert, Moncef Boumaïza, Jean Thioulouse

Recent Advances in Environmental Science from the Euro-Mediterranean and Surrounding Regions (2nd Edition) . : 1915-1919

DOI: 10.1007/978-3-030-51210-1_301

Book chapter

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Overcoming the Spurious Groups Problem in Between-Group PCA

Jean Thioulouse, Sabrina Renaud, Anne-Béatrice Dufour, Stéphane Dray

Evolutionary Biology .

DOI: 10.1007/s11692-021-09550-0

Journal article

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Author Correction: Complex ecological interactions of Staphylococcus aureus in tampons during menstruation

Isaline Jacquemond, Anaëlle Muggeo, Gery Lamblin, Anne Tristan, Yves Gillet, Pierre Adrien Bolze...

Scientific Reports . 10 ( 1 ) : 1848

DOI: 10.1038/s41598-020-57947-2

Journal article

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Surface water quality assessment in a semiarid Mediterranean region (Medjerda, Northern Tunisia) using partial triadic analysis

Noura Slimani, Juan José Jiménez, Eric Guilbert, Moncef Boumaiza, Jean Thioulouse

Environmental Science and Pollution Research .

DOI: 10.1007/s11356-020-09326-7

Journal article

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Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women

Myriam Chiaruzzi, Alexia Barbry, Anaëlle Muggeo, Anne Tristan, Isaline Jacquemond, Cedric Badiou...

Applied and Environmental Microbiology . 86 ( 18 ) : e01249-20

DOI: 10.1128/AEM.01249-20

Journal article

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Assessing potential surrogates of macroinvertebrate diversity in North-African Mediterranean aquatic ecosystems

Noura Slimani, David Sánchez-Fernández, Eric Guilbert, Moncef Boumaiza, Simone Guareschi, Jean Thioulouse

Ecological Indicators . 101 : 324-329

DOI: 10.1016/j.ecolind.2019.01.017

Journal article

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Impact of currently marketed tampons and menstrual cups on Staphylococcus aureus growth and TSST-1 production in vitro

Louis Nonfoux, Myriam Chiaruzzi, Cédric Badiou, Jessica Baude, Anne Tristan, Jean Thioulouse...

Applied and Environmental Microbiology . 84 ( 12 )

DOI: 10.1128/AEM.00351-18

Journal article

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Complex ecological interactions of Staphylococcus aureus in tampons during menstruation

Isaline Jacquemond, Anaëlle Muggeo, Gery Lamblin, Anne Tristan, Yves Gillet, Pierre Adrien Bolze...

Scientific Reports . 8 ( 1 ) : 9942

DOI: 10.1038/s41598-018-28116-3

Journal article

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Multivariate Analysis of Ecological Data with ade4

Jean Thioulouse, Stéphane Dray, Anne-Béatrice Dufour, Aurélie Siberchicot, Thibaut Jombart, Sandrine Pavoine

DOI: 10.1007/978-1-4939-8850-1

Book

see the publication

Management of the mycorrhizal soil infectivity with Crotalaria ochroleuca, an indigenous wild legume in the tropics: Impacts on microbial functional diversity involved in phosphorus mobilization processes in a sahelian soil

N. Benkhoua, M. Hafidi, W. Badri, Ezékiel Baudoin, Jean Thioulouse, Yves Prin...

Ecological Engineering . 101 : 130-136

DOI: 10.1016/j.ecoleng.2017.01.010

Journal article

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Raisonner l'utilisation des légumineuses ligneuses pour réhabiliter des sols dégradés en milieu méditerranéen et tropical

Robin Duponnois, Jean Thioulouse, Ezekiel Baudoin, Christine Leroux, Antoine Galiana, Y Prin

Innovations Agronomiques . 60 : 125-131

DOI: 10.15454/1.5138523036590977E12

Journal article

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adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

Aurélie Siberchicot, A. Julien-Laferrière, Ab. Dufour, J. Thioulouse, S. Dray

The R Journal . 9 ( 2 ) : 198-212

DOI: 10.32614/RJ-2017-042

Journal article

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The use of STATICO and COSTATIS, two exploratory three-ways analysis methods: an application to the ecology of aquatic heteroptera in the Medjerda watershed (Tunisia)

Noura Slimani, Eric Guilbert, Foued El Ayni, Amel Jrad, Moncef Boumaiza, Jean Thioulouse

Environmental and Ecological Statistics . 24 ( 2 ) : 269 - 295

DOI: 10.1007/s10651-017-0370-6

Journal article

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Impact of Wheat/Faba Bean Mixed Cropping or Rotation Systems on Soil Microbial Functionalities

Sanâa Wahbi, Yves Prin, Jean Thioulouse, Hervé Sanguin, Ezékiel Baudoin, Tasnime Maghraoui...

Frontiers in Plant Science . 7 : 1364

DOI: 10.3389/fpls.2016.01364

Journal article

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Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties

Amélie Deredjian, Nolwenn Alliot, Laurine Blanchard, Elisabeth Brothier, Makram Anane, Philippe Cambier...

Research in Microbiology . 167 ( 4 ) : 313-324

DOI: 10.1016/j.resmic.2016.01.001

Journal article

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Bacterial community structure at the microscale in two different soils

Rory Michelland, Jean Thioulouse, Martina Kyselková, Geneviève Grundmann

Microbial ecology . 72 ( 3 ) : 717-724

DOI: 10.1007/s00248-016-0810-0

Journal article

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Field Application of the Mycorrhizal Fungus Rhizophagus irregularis Increases the Yield of Wheat Crop and Affects Soil Microbial Functionalities

S. Wahbi, Y. Prin, T. Maghraoui, H. Sanguin, Jean Thioulouse, K. Oufdou...

American Journal of Plant Sciences . 06 : 3205-3215

DOI: 10.4236/ajps.2015.619312

Journal article

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Potentialities of ecological engineering strategy based on native arbuscular mycorrhizal community for improving afforestation programs with carob trees in degraded environments

N. Manaut, H. Sanguin, L. Ouahmane, M. Bressan, Jean Thioulouse, E. Baudoin...

Ecological Engineering . 79 : 113-119

Journal article

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Soil Organic Matter Quality, Structure and Activity of the Denitrifiers Community as Influenced by Decaying Mulched Crop Residues

A. Dieng, E. Baudoin, Jean Thioulouse, D. Brunet, J. Toucet, Sn. Sylla...

Applied Ecology and Environmental Research . 13 : 655-675

Journal article

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Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale

Nicolas Chemidlin Prévost-Bouré, Samuel S. Dequiedt, Jean Thioulouse, Mélanie M. Lelievre, Nicolas Saby, Claudy C. Jolivet...

PLoS ONE . 9 ( 11 ) : 1-11

DOI: 10.1371/journal.pone.0111667

Journal article

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Ectomycorrhizal fungi on the early colonizing shrub Sarcolaena oblongifolia F. facilitate the establishment of an endemic tree Uapaca bojeri L. in Madagascarian highland forests

H. Ramanankierana, R. Baohanta, H. Randriambanona, Y Prin, N. Rakotoarimanga, E. Baudoin...

International Journal of Ecology and Ecosolution . 1 : 1-15

Journal article

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Managing Mediterranean nurse plants-mediated effects on soil microbial functions to improve rock phosphate solubilization processes and early growth of Cupressus atlantica G

M. Hafidi, L. Ouahmane, J. Thioulouse, H. Sanguin, A. Boumezzough, Y. Prin...

Ecological Engineering . 57 : 57--64

DOI: 10.1016/j.ecoleng.2013.04.006

Journal article

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Native plant resources to optimize the performances of forest rehabilitation in Mediterranean and tropical environment: some examples of nursing plant species that improve the soil mycorrhizal potential

R. Duponnois, H. Ramanankierana, M. Hafidi, R. Baohanta, E. Baudoin, Jean Thioulouse...

Comptes Rendus. Biologies . 336 : 265-272

DOI: 10.1016/j.crvi.2013.04.015

Journal article

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L'introduction d'acacias australiens pour réhabiliter des écosystèmes dégradés est-elle dépourvue de risques environnementaux ?

R. Duponnois, E. Baudoin, H. Sanguin, Jean Thioulouse, C. Le Roux, E. Tournier...

Bois et Forêts des Tropiques . 318 : 59-65

Journal article

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A new process to promote the use of controlled mycorrhization practice in forest nurseries

L. Ndoye, A. Soumaré, Ec. Agbangba, J. Thioulouse, A. Galiana, Y. Prin...

African Journal of Agricultural Research . 8 : 308--316

DOI: 10.5897/AJAR12.1642

Journal article

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Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.

L. Ranjard, S. Dequiedt, Nicolas Chemidlin Prévost-Bouré, J. Thioulouse, N. P. A. Saby, M. Lelievre...

Nature Communications . 4 : 1434

DOI: 10.1038/ncomms2431

Journal article

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