GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Stoneking Mark

Chercheur invité

UCBL

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Email

Publications

Display of 1 to 30 publications on 71 in total

Neanderthal adaptive introgression shaped LCT enhancer region diversity without linking to lactase persistence in East Asian populations

Xixian Ma, Yan Lu, Mark Stoneking, Shuhua Xu

Proceedings of the National Academy of Sciences of the United States of America . 122 ( 11 ) : e2404393122

DOI: 10.1073/pnas.2404393122

Journal article

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Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam

Dinh Huong Thao, Tran Huu Dinh, Shigeki Mitsunaga, La Duc Duy, Nguyen Thanh Phuong, Nguyen Phuong Anh...

PLoS ONE . 19 ( 6 ) : e0304964

DOI: 10.1371/journal.pone.0304964

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Complete mitochondrial genomes of patients from Thailand with cardiovascular diseases

Wipada Woravatin, Rattanasak Wongkomonched, Wichittra Tassaneeyakul, Mark Stoneking, Pattarapong Makarawate, Wibhu Kutanan

PLoS ONE . 19 ( 7 ) : e0307036

DOI: 10.1371/journal.pone.0307036

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The genetic legacy of the expansion of Bantu-speaking peoples in Africa

Cesar A Fortes-Lima, Concetta Burgarella, Rickard Hammarén, Anders Eriksson, Mário Vicente, Cecile Jolly...

Nature . 625 ( 7995 ) : 540–547

DOI: 10.1038/s41586-023-06770-6

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South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture

Wipada Woravatin, Mark Stoneking, Metawee Srikummool, Jatupol Kampuansai, Leonardo Arias, Wibhu Kutanan

PLoS ONE . 18 ( 9 ) : e0291547

DOI: 10.1371/journal.pone.0291547

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The genomic diversity of Taiwanese Austronesian groups: Implications for the “Into- and Out-of-Taiwan” models

Dang Liu, Albert Min-Shan Ko, Mark Stoneking

PNAS Nexus . 2 ( 5 )

DOI: 10.1093/pnasnexus/pgad122

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Genomic perspectives on human dispersals during the Holocene

Mark Stoneking, Leonardo Arias, Dang Liu, Sandra Oliveira, Irina Pugach, Jae Joseph Russell B Rodriguez

Proceedings of the National Academy of Sciences of the United States of America . 120 ( 4 )

DOI: 10.1073/pnas.2209475119

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Genomic portrait and relatedness patterns of the Iron Age Log Coffin culture in northwestern Thailand

Selina Carlhoff, Wibhu Kutanan, Adam B Rohrlach, Cosimo Posth, Mark Stoneking, Kathrin Nägele...

Nature Communications . 14 ( 1 ) : 8527

DOI: 10.1038/s41467-023-44328-2

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Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry

Sandra Oliveira, Anne-Maria Fehn, Beatriz Amorim, Mark Stoneking, Jorge Rocha

Science Advances . 9 ( 38 )

DOI: 10.1126/sciadv.adh3822

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Interpreting mismatches between linguistic and genetic patterns among speakers of Tanimuka (Eastern Tukanoan) and Yukuna (Arawakan)

Leonardo Arias, Nicholas Q Emlen, Sietze Norder, Nora Julmi, Magdalena Lemus Serrano, Thiago Chacon...

Interface Focus . 13

DOI: 10.1098/rsfs.2022.0056

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Ethical challenges in genetic research among Philippine Indigenous Peoples: Insights from fieldwork in Zamboanga and the Sulu Archipelago

Jae Joseph Russell B Rodriguez, John Meldwin D Cuales, Michael James B Herrera, Louward Allen M Zubiri, Richard N. Muallil, Altan I. Ishmael...

Frontiers in Genetics . 13 : 901515

DOI: 10.3389/fgene.2022.901515

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The transmission of human mitochondrial DNA in four‐generation pedigrees

Qi Liu, Muhammad Faaras Iqbal, Tahir Yaqub, Sehrish Firyal, Yiqiang Zhao, Mark Stoneking...

Human Mutation . 43 : 1259-1267

DOI: 10.1002/humu.24390

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The social lives of isolates (and small language families): the case of the Northwest Amazon

Rik van Gijn, Sietze Norder, Leonardo Arias, Nicholas Q Emlen, Matheus C B C Azevedo, Allison Caine...

Interface Focus . 13 ( 1 ) : 20220054

DOI: 10.1098/rsfs.2022.0054

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Assessing Human Genome-wide Variation in the Massim Region of Papua New Guinea and Implications for the Kula Trading Tradition

Dang Liu, Benjamin M Peter, Wulf Schiefenhövel, Manfred Kayser, Mark Stoneking

Molecular Biology and Evolution . 39

DOI: 10.1093/molbev/msac165

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Ancient genomes from the last three millennia support multiple human dispersals into Wallacea

Sandra Oliveira, Kathrin Nägele, Selina Carlhoff, Irina Pugach, Toetik Koesbardiati, Alexander Hübner...

Nature Ecology & Evolution . 6 : 1024 - 1034

DOI: 10.1038/s41559-022-01775-2

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Reconstructing the Human Genetic History of Mainland Southeast Asia: Insights from Genome-Wide Data from Thailand and Laos

Wibhu Kutanan, Dang Liu, Jatupol Kampuansai, Metawee Srikummool, Suparat Srithawong, Rasmi Shoocongdej...

Molecular Biology and Evolution . 38 ( 8 ) : 3459 - 3477

DOI: 10.1093/molbev/msab124

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Exploring correlations in genetic and cultural variation across language families in northeast Asia

Hiromi Matsumae, Peter Ranacher, Patrick Savage, Damián Blasi, Thomas Currie, Kae Koganebuchi...

Science Advances . 7 ( 34 )

DOI: 10.1126/sciadv.abd9223

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Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn

Song Guo, Shuyun Huang, Xi Jiang, Haiyang Hu, Dingding Han, Carlos S Moreno...

BMC Genomics . 22 : 286

DOI: 10.1186/s12864-021-07542-0

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Genomic insights into population history and biological adaptation in Oceania

Jeremy Choin, Javier Mendoza-Revilla, Lara R Arauna, Sebastian Cuadros-Espinoza, Olivier Cassar, Maximilian Larena...

Nature . 592 ( 7855 ) : 583-589

DOI: 10.1038/s41586-021-03236-5

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The genomic prehistory of peoples speaking Khoisan languages

Brigitte Pakendorf, Mark Stoneking

Human Molecular Genetics . 30 ( 2 ) : R49-R55

DOI: 10.1093/hmg/ddaa221

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Ancient DNA from Guam and the peopling of the Pacific

Irina Pugach, Alexander Hübner, Hsiao-Chun Hung, Matthias Meyer, Mike Carson, Mark Stoneking

Proceedings of the National Academy of Sciences of the United States of America . 118 ( 1 ) : 1-12

DOI: 10.1073/pnas.2022112118

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Expanding the Geographic Characterisation of Epstein–Barr Virus Variation through Gene-Based Approaches

Marco Telford, David Hughes, David Juan, Mark Stoneking, Arcadi Navarro, Gabriel Santpere

Microorganisms . 8 ( 11 ) : 1686

DOI: 10.3390/microorganisms8111686

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Ancient DNA indicates human population shifts and admixture in northern and southern China

Melinda Yang, Xuechun Fan, Bo Sun, Chungyu Chen, Jianfeng Lang, Ying-Chin Ko...

Science . 369 ( 6501 ) : 282-288

DOI: 10.1126/science.aba0909

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Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand

Wibhu Kutanan, Rasmi Shoocongdej, Metawee Srikummool, Alexander Hübner, Thanatip Suttipai, Suparat Srithawong...

European Journal of Human Genetics . 28 : 1563 - 1579

DOI: 10.1038/s41431-020-0693-x

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The paternal and maternal genetic history of Vietnamese populations

Enrico Macholdt, Leonardo Arias, Nguyen Thuy Duong, Nguyen Dang Ton, Nguyen Van Phong, Roland Schröder...

European Journal of Human Genetics . 28 ( 5 ) : 636-645

DOI: 10.1038/s41431-019-0557-4

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Extensive Ethnolinguistic Diversity in Vietnam Reflects Multiple Sources of Genetic Diversity

Dang Liu, Nguyen Thuy Duong, Nguyen Dang Ton, Nguyen van Phong, Brigitte Pakendorf, Nong van Hai...

Molecular Biology and Evolution . 37 ( 9 ) : 2503 - 2519

DOI: 10.1093/molbev/msaa099

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Papuan mitochondrial genomes and the settlement of Sahul

Nicole Pedro, Nicolas Brucato, Verónica Fernandes, Mathilde André, Lauri Saag, William Pomat...

Journal of Human Genetics .

DOI: 10.1038/s10038-020-0781-3

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The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast

Chiara Barbieri, Rodrigo Barquera, Leonardo Arias, José R Sandoval, Oscar Acosta, Camilo Zurita...

Molecular Biology and Evolution . 36 ( 12 ) : 2698 - 2713

DOI: 10.1093/molbev/msz174

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WGS-based telomere length analysis in Dutch family trios implicates stronger maternal inheritance and a role for RRM1 gene

Lilit Nersisyan, Maria Nikoghosyan, Laurent C Francioli, Androniki Menelaou, Sara L Pulit, Clara C Elbers...

Scientific Reports . 9 : 18758

DOI: 10.1038/s41598-019-55109-7

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Archaic mitochondrial DNA inserts in modern day nuclear genomes

Robert Bücking, Murray Cox, Georgi Hudjashov, Lauri Saag, Herawati Sudoyo, Mark Stoneking

BMC Genomics . 20 ( 1 ) : 1017

DOI: 10.1186/s12864-019-6392-8

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