Systems biology - Biological networks modelling
Metabolic Pathway Analysis
- Constraint-based modelling
- Logic programming
- Thermodynamics
Cancer metabolism
- Metabolic rerouting
- Dynamic modelling
- Metabolic therapies
Publications
Display of 1 to 30 publications on 44 in total
Computing Thermodynamically Consistent Elementary Flux Modes with Answer Set Programming
CMSB 2024 - 22nd International Conference Computational Methods in Systems Biology . LNCS-14971 : 80-88
Conference paper
see the publicationLogic programming-based Minimal Cut Sets reveal consortium-level therapeutic targets for chronic wound infections
npj Systems Biology and Applications . 10 ( 1 ) : 34
Journal article
see the publicationMinimal Cut Sets of a Consortium Model of P. aeruginosa and S. aureus Reveal New Cross-Feeding Interactions
Metabolic Pathway Analysis 2023 .
Conference paper
see the publicationHybrid modelling to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling
BIOSTEC 2023 .
Conference paper
see the publicationGeometric programming to Solve Optimal Concentrations of Metabolites and Enzymes in Constraint-based modelling
International Conference on System Biology .
Conference paper
see the publicationSpecial Issue on “Frontiers in Connecting Steady-State and Dynamic Approaches for Modelling Cell Metabolic Behavior”
Processes . 10 ( 8 ) : 1612
DOI: 10.3390/pr10081612
Journal article
see the publicationHybrid metabolic modeling to identify new control strategies of living organisms
Hybrid models and methods in systems medicine .
Conference paper
see the publicationMod ́elisation m ́etabolique pour identifier de nouvelles strat ́egies de contrˆole des organismes vivants
Meetochondrie .
Conference paper
see the publicationAnswer set programming to compute constraint elementary flux modes
Computational Methods in System Biology .
Conference paper
see the publicationAnswer set programming to compute constraint elementary flux modes.
Metabolic Pathway Analysis .
Conference paper
see the publicationFine-tuning mitochondrial activity in Yarrowia lipolytica for citrate overproduction
Scientific Reports . 11 ( 1 ) : 878
Journal article
see the publicationCombining Kinetic and Constraint-Based Modelling to Better Understand Metabolism Dynamics
Processes . 9 ( 10 ) : 1701
DOI: 10.3390/pr9101701
Journal article
see the publicationAnswer Set Programming for Computing Constraints-Based Elementary Flux Modes: Application to Escherichia coli Core Metabolism
Processes . 8 ( 12 ) : 1649
DOI: 10.3390/pr8121649
Journal article
see the publicationCancer and Alzheimer’s disease: intracellular pH scales the metabolic disorders
Biogerontology . 21 ( 6 ) : 683-694
Journal article
see the publicationThermodynamic Approaches in Flux Analysis
Metabolic Flux Analysis in Eukaryotic Cells . : 359-367
Book chapter
see the publicationA kinetic metabolic study of lipid production in Chlorella protothecoides under heterotrophic condition
Microbial Cell Factories . 18 ( 1 ) : 113
Journal article
see the publicationMetabolic therapies inhibit tumor growth in vivo and in silico
Scientific Reports . 9 ( 1 ) : 3153
Journal article
see the publicationModulating mitochondria horsepower for biotechnological applications
Metabolic Pathway Analysis 2019 .
Conference paper
see the publicationUsing a hybrid approach to model central carbon metabolism across the cell cycle
International Workshop on Hybrid Systems Biology . 11705
Conference paper
see the publicationThermodynamic constraints for identifying elementary flux modes
Biochemical Society Transactions . 46 ( 3 ) : 641-647
DOI: 10.1042/BST20170260
Journal article
see the publicationIdentifying Biomarkers of Wharton’s Jelly Mesenchymal Stromal Cells Using a Dynamic Metabolic Model: The Cell Passage Effect
Metabolites . 8 ( 1 ) : 18
Journal article
see the publicationMetabolic view of tumor growth: a kinetic model to screen potential therapeutic targets
Computational systems biology for cancer .
Conference paper
see the publicationA dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by-product
Biotechnology and Bioengineering . 114 ( 12 ) : 2907 - 2919
DOI: 10.1002/bit.26393
Journal article
see the publicationComputing EFMs consistent with equilibrium constants
Metabolic Pathway Analysis MPA 2017 .
Conference paper
see the publicationHSM a reduced model of Central Carbon Metabolism: a dynamical approach
advances in Systems and Synthetic Biology .
Conference paper
see the publicationHow important is thermodynamics for identifying elementary flux modes?
PLoS ONE . 12 ( 2 ) : e0171440
Journal article
see the publicationMinimality of Metabolic Flux Modes under Boolean Regulation Constraints
12th International Workshop on Constraint-Based Methods for Bioinformatics WCB’16 .
Conference paper
see the publicationReprésentation systémique multi-échelle des processus biologiques de la bactérie
IC2016 - Ingénierie des Connaissances .
Conference paper
see the publicationReprésentation systémique multi-échelle des processus biologiques de la bactérie
IC201: 27es Journées francophones d'Ingénierie des Connaissances .
Conference paper
see the publicationHuman-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells
advances in Systems and Synthetic Biology .
Conference paper
see the publication