COEVOL Multi-Scale Coevolution

The Cocoon Group

Tannier Eric

Directeur de recherche

INRIA

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 26 23 44 74

Email

Chercheur en biologie computationnelle, évolution, liens sciences-sociétés, permaculture

 

Recherches :

- Thèses de Alexandre Laverré (avec Anouk Necsulea), Théo Tricou (avec Damien de Vienne), Hugo Menet (avec Vincent Daubin)

- Action exploratoire "Community Garden Book" (équipe projet Inria Beagle)

- Fabrique des Questions Simples, laboratoire incubateur de recherches dans l'anthropocène

 

Enseignements :

- Cours M1 bioinformatique MADG

- Cours Ethique en video (Master et Doctorat), Video 1 et Video 2, Intégrité Scientifique Partie 1, Partie 2, Partie 3

- Cours Ethique en diapos

- Atelier Sciences Environnements Sociétés

 

Responsabilités - Animations :

- Membre du comité scientifique de la Plateforme Resetis

- Membre du comité scientifique de la boutique des sciences

- Co-fondateur et éditeur de Peer Community in Mathematical and Computational Biology

Publications

Display of 91 to 120 publications on 123 in total

RECOMB Satellite Workshop on Comparative Genomics

Eric Tannier

8. Annual RECOMB Satellite Workshop on Comparative Genomics . 978-3-642-16181-0 : 303

see the publication

Comparative Genomics

Eric Tannier

incollection . 6938 : 1-12

Journal article

see the publication

Guided genome halving: provably optimal solutions provide good insights into the preduplication ancestral genome of Saccharomyces cerevisiae.

Haris Gavranović, Eric Tannier

Pacific Symposium on Biocomputing . 15 : 21-30

DOI: 10.1142/9789814295291_0004

Conference paper

see the publication

Combinatorics of Genome Rearrangements

Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, Stéphane Vialette

978-0-262-06282-4 : 312

Book

see the publication

Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes

Claire Lemaitre, Marília D.V. Braga, Christian Gautier, M.-F. Sagot, Eric Tannier, Gabriel Marais

Genome Biology and Evolution . 1(1) : 56-66

Journal article

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Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods

Eric Tannier

RECOMB International Workshop on Comparative Genomics . 5817 : 1-12

DOI: 10.1007/978-3-642-04744-2_1

Conference paper

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Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

Claire Lemaitre, Lamia Zaghloul, Marie-France Sagot, Christian Gautier, Alain Arneodo, Eric Tannier...

BMC Genomics . 10 ( 1 ) : 335

DOI: 10.1186/1471-2164-10-335

Journal article

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Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes

Sèverine Bérard, Annie Chateau, Cedric Chauve, Christophe Paul, Eric Tannier

Journal of Computational Biology . 16 ( 10 ) : 1287-1309

DOI: 10.1089/cmb.2009.0088

Journal article

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Prediction of Contiguous Regions in the Amniote Ancestral Genome

Aïda Ouangraoua, Frédéric Boyer, Andrew Mcpherson, Eric Tannier, Cedric Chauve

ISBRA 2009, 5th International Symposium on Bioinformatics Research and Applications, . 5542

DOI: 10.1007/978-3-642-01551-9_18

Conference paper

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Multichromosomal median and halving problems under different genomic distances

Eric Tannier, Chunfang Zheng, David Sankoff

BMC Bioinformatics . 10 ( 1 ) : 120

DOI: 10.1186/1471-2105-10-120

Journal article

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Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution

Marília D.V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 5 ( 3 ) : 348-356

DOI: 10.1109/TCBB.2008.16

Journal article

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Precise detection of rearrangement breakpoints in mammalian chromosomes

Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot

: 26

Report

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Prédiction de synténies dans le génome ancestral des amniotes

F. Boyer, C. Chauve, Eric Tannier

Journées Ouvertes de Biologie, Informatique et Mathématiques, JOBIM 2008 . : 141-148

Conference paper

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Perfect DCJ rearrangement

Annie Chateau, Cedric Chauve, Sèverine Bérard, Eric Tannier, Christophe Paul

RECOMB-CG: Comparative Genomics . LNCS ( 5267 ) : 158-169

DOI: 10.1007/978-3-540-87989-3_12

Conference paper

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Advances on Stochastic Local Search Algorithms for the Genomic Median Problem

Renaud Lenne, Christine Solnon, Thomas Stützle, Eric Tannier

International Conference on Metaheuristics and Nature Inspired Computing (META) . 4872 : 266-276

Conference paper

see the publication

Multichromosomal Genome Median and Halving Problems

Eric Tannier, C. Zheng, D. Sankoff

International Workshop on Algorithms in Bioinformatics (WABI) . 5251 : 1-13

DOI: 10.1007/978-3-540-87361-7_1

Conference paper

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A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes

C. Chauve, Eric Tannier

PLoS Computational Biology . 4 : 391-410

Journal article

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Sorting Signed Permutations by Reversal (Reversal Sequence) 2004; Tannier Sagot

Eric Tannier

incollection . -- : 860-863

Journal article

see the publication

Reactive Stochastic Local Search Algorithms for the Genomic Median Problem

R. Lenne, Christine Solnon, T. Stützle, Eric Tannier, M. Birattari

European Conference on Evolutionary Computation in Combinatorial Optimization (EvoCOP) . 4972 : 266-276

DOI: 10.1007/978-3-540-78604-7_23

Conference paper

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A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and its Application to Mammalian Genomes

Eric Tannier, Cedric Chauve

: 26

Report

see the publication

Precise detection of rearrangement breakpoints in mammalian chromosomes

Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot

BMC Bioinformatics . 9 ( 1 ) : 286

DOI: 10.1186/1471-2105-9-286

Journal article

see the publication

The solution space of sorting by reversals

Marília D.V. Braga, Marie-France Sagot, Celine Scornavacca, Eric Tannier

3rd International Symposium on Bioinformatics Research and Applications (ISBRA 2007) . 4463 : 293-304

DOI: 10.1007/978-3-540-72031-7_27

Conference paper

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Evolution under Reversals: Parsimony and Conservation of Common Intervals

Y. Diekmann, M.-F. Sagot, Eric Tannier

IEEE/ACM Transactions on Computational Biology and Bioinformatics . 4 : 301-309

Journal article

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Advances on sorting by reversals

Eric Tannier, A. Bergeron, M.-F. Sagot

Discrete Applied Mathematics . 155 : 881-888

Journal article

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Théorie des Codes : compression, cryptage, correction

Jean-Guillaume Dumas, Jean-Louis Roch, Eric Tannier, Sébastien Varrette

9782100506927 : 352

Book

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Effective Stochastic Local Search Algorithms for the Genomic Median Problem

Renaud Lenne, Christine Solnon, Thomas Stützle, Eric Tannier, Mauro Birattari

Doctoral Symposium on Engineering Stochastic Local Search Algorithms (SLS-DS) . : 1-5

Conference paper

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Perfect Sorting by Reversals

Marie-France Sagot, Eric Tannier

: 13

Report

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Perfect sorting by reversals

M.-F. Sagot, Eric Tannier

International Computing and Combinatorics Conference . 3595 : 42-51

DOI: 10.1007/11533719_7

Conference paper

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On Metric Generators of Graphs

András Sebő, Eric Tannier

Mathematics of Operations Research . 29 : 383-393

Journal article

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Sorting by reversals in subquadratic time

Eric Tannier, Marie-France Sagot

Report

see the publication