
Publications
Display of 1 to 27 publications on 27 in total
Models and Algorithms for Managing Repeats in the De Novo Assembly of Transcriptomes Models and Algorithms for Managing Repeats in the De Novo Assembly of Transcriptomes
JOBIM 2025 .
Poster
see the publicationEnumeration of minimal transversals of hypergraphs of bounded VC-dimension
Preprint
see the publicationComplexity and algorithms for Swap median and relation to other consensus problems
Preprint
see the publicationEfficient enumeration of maximal split subgraphs and induced sub-cographs and related classes
Discrete Applied Mathematics . 345 : 34-51
Journal article
see the publicationIdentification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues
Peer Community Journal . 4 ( e89 )
Journal article
see the publicationPolynomial Delay Algorithm for Minimal Chordal Completions
49th International Colloquium on Automata, Languages, and Programming (ICALP) .
Conference paper
see the publicationEfficiently sparse listing of classes of optimal cophylogeny reconciliations
Algorithms for Molecular Biology . 17 ( 1 ) : 1-16
Journal article
see the publicationTotoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations
Frontiers in Genetics . 13 : 1-12
Journal article
see the publicationCALDERA: Finding all significant de Bruijn subgraphs for bacterial GWAS
Bioinformatics .
Journal article
see the publicationMOOMIN – Mathematical explOration of ’Omics data on a MetabolIc Network
Bioinformatics . 36 ( 2 ) : 514-523
Journal article
see the publicationAlgorithms for the quantitative Lock/Key model of cytoplasmic incompatibility
Algorithms for Molecular Biology . : 1-16
Journal article
see the publicationThe Perfect Matching Reconfiguration Problem
MFCS 2019 - 44th International Symposium on Mathematical Foundations of Computer Science . : 1-14
Conference paper
see the publicationEfficient enumeration of solutions produced by closure operations
Discrete Mathematics and Theoretical Computer Science . : 1-30
Journal article
see the publicationBounding the Order of a Graph Using Its Diameter and Metric Dimension: A Study Through Tree Decompositions and VC Dimension
SIAM Journal on Discrete Mathematics . 32 ( 2 ) : 902 - 918
DOI: 10.1137/16M1097833
Journal article
see the publicationReconfiguration of graphs with connectivity constraints
WAOA 2018 - International Workshop on Approximation and Online Algorithms . 11312 : 295-309
Conference paper
see the publicationBacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits
Phytochemistry Reviews . : 1-36
Journal article
see the publicationAlgorithms for k-meet-semidistributive lattices
Theoretical Computer Science . 658 : 391 - 398
Journal article
see the publicationToken Jumping in minor-closed classes
International symposium on fundamentals of computer theory (FCT 2017) . 10472 : 136-149
Conference paper
see the publicationA Combinatorial Algorithm for Microbial Consortia Synthetic Design
Scientific Reports .
DOI: 10.1038/srep29182
Journal article
see the publicationA Polynomial Delay Algorithm for Enumerating Minimal Dominating Sets in Chordal Graphs
WG 2015: Graph-Theoretic Concepts in Computer Science . : 138-153
Book chapter
see the publicationMultiPus: Conception de communautés microbiennes pour la production de composés d'intérêt
Jobim .
Poster
see the publicationEfficient Enumeration of Solutions Produced by Closure Operations
33rd Symposium on Theoretical Aspects of Computer Science, STACS 2016 . 47
Conference paper
see the publicationOn Maximal Chain Subgraphs and Covers of Bipartite Graphs
Combinatorial Algorithms - 27th International Workshop, IWOCA 2016 . 9843 : 137-150
Conference paper
see the publicationPolynomial Delay Algorithm for Listing Minimal Edge Dominating Sets in Graphs
Algorithms and Data Structures (WADS) . 9214 : 446-457
Conference paper
see the publicationIncremental complexity of a bi-objective hypergraph transversal problem
Fundamentals of Computation Theory (FCT2015) . 9210 : 202-213
Conference paper
see the publicationAn average study of hypergraphs and their minimal transversals
Theoretical Computer Science . 596 : 124-141
Journal article
see the publicationOn the Enumeration of Minimal Dominating Sets and Related Notions
SIAM Journal on Discrete Mathematics . 28 ( 4 ) : 1916 - 1929
DOI: 10.1137/120862612
Journal article
see the publication