GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Coluzzi Charles

Enseignant-chercheur CPJ

UCBL

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Email

Publications

Display of 1 to 25 publications on 25 in total

Hijackers, hitchhikers, or co-drivers? The mysteries of mobilizable genetic elements

Manuel Ares-Arroyo, Charles Coluzzi, Jorge A Moura de Sousa, Eduardo P C Rocha

PLoS Biology . 22 ( 8 ) : e3002796

DOI: 10.1371/journal.pbio.3002796

Journal article

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A type IVB secretion system contributes to the pathogenicity of Yersinia pseudotuberculosis strains responsible for the Far East scarlet-like fever

Marion Lemarignier, Cyril Savin, Ines Ruedas Torres, Anne Derbise, Charles Coluzzi, Julien Burlaud-Gaillard...

DOI: 10.1101/2024.06.14.598817

Preprint

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Evo‐Scope : Fully automated assessment of correlated evolution on phylogenetic trees

Maxime Godfroid, Charles Coluzzi, Amaury Lambert, Philippe Glaser, Eduardo P C Rocha, Guillaume Achaz

Methods in Ecology and Evolution . 15 ( 2 ) : 282 - 289

DOI: 10.1111/2041-210x.14190

Journal article

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MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes

Bertrand Néron, Rémi Denise, Charles Coluzzi, Marie Touchon, Eduardo P.C. Rocha, Sophie Abby

Peer Community Journal . 3 : e28

DOI: 10.24072/pcjournal.250

Journal article

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Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes

Charles Coluzzi, Martin Guillemet, Fanny Mazzamurro, Marie Touchon, Maxime Godfroid, Guillaume Achaz...

Molecular Biology and Evolution . 40 ( 10 ) : msad217

DOI: 10.1093/molbev/msad217

Journal article

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MacSyFinder v2: An improved search engine to model and identify molecular systems in genomes

Bertrand Néron, Rémi Denise, Charles Coluzzi, Marie Touchon, Eduardo Rocha, Sophie Abby

JOBIM .

Poster

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ICEscreen: a valuable tool for automatic detection of ICEs and IMEs in Firmicutes

Nathalie N. Leblond-Bourget, Julie Lao, Sophie Payot, Thomas Lacroix, Gérard Guédon, Charles Coluzzi...

Réunion du GDR3546 Eléments transposables .

Conference paper

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ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures

Julie Lao, Thomas Lacroix, Gérard Guédon, Charles Coluzzi, Sophie Payot, Nathalie Leblond-Bourget...

NAR Genomics and Bioinformatics . 4 ( 4 ) : lqac079

DOI: 10.1093/nargab/lqac079

Journal article

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NAR Breakthrough Article Origins of transfer establish networks of functional dependencies for plasmid transfer by conjugation

Manuel Ares-Arroyo, Charles Coluzzi, Eduardo P.C. Rocha

Nucleic Acids Research . 51 ( 7 ) : 3001–3016

DOI: 10.1093/nar/gkac1079

Journal article

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Streptococcus suis as a reservoir of antibiotic resistance genes carried by Mobile Genetic Elements transferring by conjugation

Sophie Payot, Virginie Libante, Yves Nombre, Charles Coluzzi, Johan Staub, Gérard Guédon...

5th International Caparica Congress in Antibiotic Resistance (IC2AR 2022) .

Conference paper

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Evolution of Plasmid Mobility: Origin and Fate of Conjugative and Nonconjugative Plasmids

Charles Coluzzi, Maria Pilar Garcillán-Barcia, Fernando de la Cruz, Eduardo P.C. Rocha

Molecular Biology and Evolution . 39 ( 6 ) : msac115

DOI: 10.1093/molbev/msac115

Journal article

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Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium

Helit Cohen, Claire Hoede, Felix Scharte, Charles Coluzzi, Emiliano Cohen, Inna Shomer...

PLoS Pathogens . 18 ( 4 ) : 35 p.

DOI: 10.1371/journal.ppat.1010425

Journal article

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ICEscreen

Hélène Chiapello, Charles Coluzzi, Nathalie N. Leblond-Bourget, Thomas Lacroix, Julie Lao, Gérard Guédon

Software

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Chromosomal Conjugative and Mobilizable Elements in Streptococcus suis: Major Actors in the Spreading of Antimicrobial Resistance and Bacteriocin Synthesis Genes

Virginie Libante, Yves Nombre, Charles Coluzzi, Johan Staub, Gérard Guédon, Marcelo Gottschalk...

Pathogens . 9 ( 1 ) : 22

DOI: 10.3390/pathogens9010022

Journal article

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Key role of chromosomal mobile genetic elements transferring by conjugation in the dissemination of antimicrobial resistance in Streptococcus suis

Virginie Libante, Yves Nombre, Charles Coluzzi, Johan Staub, Gérard Guédon, Marcelo Gottschalk...

8th symposium on Antimicrobial Resistance in Animal and Environment .

Conference paper

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The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.

Charles Coluzzi, Julie Lao, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, Thomas Lacroix...

8th symposium on Antimicrobial Resistance in Animal and Environment .

Conference paper

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The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus

Charles Coluzzi, Julie Lao, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, Thomas Lacroix...

4th International Workshop on Streptococcus suis .

Poster

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Key role of chromosomal mobile genetic elements transferred by conjugation in the dissemination of antimicrobial resistance in S. suis

Virginie Libante, Yves Nombre, Charles Coluzzi, Johan Staub, Gérard Guédon, Marcelo Gottschalk...

4th International Workshop on Streptococcus suis .

Conference paper

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Integrative Mobilizable Element (IMEs): a reservoir of antibiotic resistance genes in the zoonotic pathogen Streptococcus suis

Virginie Libante, Nombre Yves, Charles Coluzzi, Gérard Guédon, Marcelo Gottschalk, Nahuel Fittipaldi...

GDR 3546 - Les elements mobiles du mécanisme aux populations, une approche intégrative .

Conference paper

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L'exploration des génomes par l'outil ICEFinder révèle la forte prévalence et l'extrême diversité des ICE et des IME de streptocoques

Charles Coluzzi

Thesis

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A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins

Charles Coluzzi, Gérard Guédon, Marie-Dominique Devignes, Chloé C. Ambroset, Valentin Loux, Thomas Lacroix...

Frontiers in Microbiology . 8 : 16

DOI: 10.3389/fmicb.2017.00443

Journal article

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The obscure world of integrative and mobilizable elements

Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot, Nathalie N. Leblond-Bourget

Genes . 8 ( 11 ) : 337

DOI: 10.3390/genes8110337

Journal article

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New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration

Chloé C. Ambroset, Charles Coluzzi, Gérard Guédon, Marie-Dominique Devignes, Valentin Loux, Thomas Lacroix...

Frontiers in Microbiology . 6 ( 6 ) : 1483

DOI: 10.3389/fmicb.2015.01483

Journal article

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A glimpse into an unexplored world: very high diversity of integrative and mobilizable elements in Streptococci

Charles Coluzzi, Gérard Guédon, Chloé Ambroset, Marie-Dominique Devignes, Sophie Payot, Nathalie N. Leblond-Bourget

8th ASM conference on Streptococcal Genetics .

Poster

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Prévalence et diversité des éléments intégratifs conjugatifs et mobilisables chez les streptocoques

Charles Coluzzi

: 70

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