GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 991 to 1020 publications on 1379 in total

Assessing Site-Interdependent Phylogenetic Models of Sequence Evolution

Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot

Molecular Biology and Evolution . 23 ( 9 ) : 1762-1775

DOI: 10.1093/molbev/msl041

Journal article

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Trypanosoma cruzi: sequence analysis of the variable region of kinetoplast minicircles

Jenny Telleria, Bénédicte Lafay, Myrna Virreira, Christian Barnabé, Michel Tibayrenc, Michal Svoboda

Experimental Parasitology . 114 ( 4 ) : 279-88

DOI: 10.1016/j.exppara.2006.04.005

Journal article

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Does lack of recombination enhance asymmetric evolution among duplicate genes? Insights from the Drosophila melanogaster genome

Yves Clément, Raquel Tavares, Gabriel Marais

Gene . 385 : 89-95

DOI: 10.1016/j.gene.2006.05.032

Journal article

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Recent Origin and Cultural Reversion of a Hunter–Gatherer Group

Hiroki Oota, Brigitte Pakendorf, Günter Weiss, Arndt von Haeseler, Surin Pookajorn, Wannapa Settheetham-Ishida...

PLoS Biology . 3 ( 3 ) : e71

DOI: 10.1371/journal.pbio.0030071

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Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard, L. Duret, Simon Penel, Manolo Gouy, F. Rechenmann, G. Perrière

Bioinformatics . 21 ( 11 ) : 2596-603

DOI: 10.1093/bioinformatics/bti325

Journal article

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Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

P. Kersey, L. Bower, L. Morris, A. Horne, R. Petryszak, C. Kanz...

Nucleic Acids Research . 33 ( Database issue ) : D297-302

DOI: 10.1093/nar/gki039

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Homology-dependent methylation in primate repetitive DNA.

J. Meunier, A. Khelifi, V. Navratil, L. Duret

Proceedings of the National Academy of Sciences of the United States of America . 102 ( 15 ) : 5471-6

DOI: 10.1073/pnas.0408986102

Journal article

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Natural history of the ERVWE1 endogenous retroviral locus

B. Bonnaud, J. Beliaeff, O. Bouton, G. Oriol, L. Duret, Frédéric Mallet

Retrovirology . 2 : 1-7

Journal article

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Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance

M. Sémon, Dominique Mouchiroud, L. Duret

Human Molecular Genetics . 14 : 421-427

Journal article

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HOPPSIGEN: a database of human and mouse processed pseudogenes.

A. Khelifi, L. Duret, Dominique Mouchiroud

Nucleic Acids Research . 33 ( Database issue ) : D59-66

DOI: 10.1093/nar/gki084

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Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array

Pierre Peterlongo, Nadia Pisanti, Frederique Boyer, Marie-France Sagot

String Processing and Information Retrieval, 12th International Conference, SPIRE 2005 . 3772 : 179-190

DOI: 10.1007/11575832

Conference paper

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Reaction Motifs in Metabolic Networks

Vincent Lacroix, Cristina Gomes Fernandes, Marie-France Sagot

: 14

Report

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Perfect Sorting by Reversals

Marie-France Sagot, Eric Tannier

: 13

Report

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A Comparative Study of Bases for Motif Inference

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

String Algorithmics . : 195-225

Conference paper

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A Pattern Extraction Algorithm for Abstract Melodic Representations that Allow Partial Overlapping of Intervallic Categories

Emilios Cambouropoulos, Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot

Proceedings of the 6th International Conference on Music Information Retrieval (ISMIR 2005) . : 167-174

Conference paper

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Phylogenomics of Life-Or-Death Switches in Multicellular Animals: Bcl-2, BH3-Only, and BNip Families of Apoptotic Regulators

A. Aouacheria, F. Brunet, Manolo Gouy

Molecular Biology and Evolution . 22 ( 12 ) : 2395-2416

DOI: 10.1093/molbev/msi234

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[From prevalence to predictive values: considerations on the antimicrobial susceptibility testing dealing with change of susceptibility rates].

Jean-Pierre Flandrois, B Lamy, G. Carret, M Delignette-Muller

Annales de Biologie Clinique . 63 ( 5 ) : 493-502

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A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model

G. Devulder, M. Perouse de Montclos, Jean-Pierre Flandrois

International Journal of Systematic and Evolutionary Microbiology . 55 : 293-302

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[Luca: the last universal common ancestor]

Patrick Forterre, Simonetta Gribaldo, Céline Brochier

Médecine/Sciences . 21 ( 10 ) : 860-5

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Multigene Analyses of Bilaterian Animals Corroborate the Monophyly of Ecdysozoa, Lophotrochozoa and Protostomia

Herve Philippe, Nicolas Lartillot, Henner Brinkmann

Molecular Biology and Evolution . 22 ( 5 ) : 1246-1253

DOI: 10.1093/molbev/msi111

Journal article

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Phylogenomics

Hervé Philippe, Frédéric Delsuc, Henner Brinkmann, Nicolas Lartillot

Annual Review of Ecology, Evolution, and Systematics . 36 : 541-562

Journal article

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Evolutionary origins of genomic repertoires in bacteria

E. Lerat, Vincent Daubin, H. Ochman, N.A. Moran

PLoS Biology . 3 : 0807-0814

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Recognizing the pseudogenes in bacterial genomes

E. Lerat, H. Ochman

Nucleic Acids Research . 33 : 3125-3132

Journal article

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A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison

Julien Allali, Marie-France Sagot

String Processing and Information Retrieval 2005 (SPIRE 2005) . 3772 : 348--359

DOI: 10.1007/11575832_39

Conference paper

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Polymorphix: a sequence polymorphism database

E. Bazin, L. Duret, Simon Penel, N. Galtier

Nucleic Acids Research . 33 : 481-484

Journal article

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Les trésors cachés du génome humain

L. Duret

Pour la science . -- : 16-21

Journal article

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Bioinformatics with a French accent

L.D. Hurst, L. Duret

Genome Biology . 6 : 349.1-349.3

Journal article

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