GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 931 to 960 publications on 1197 in total

Quelques problèmes statistiques rencontrés dans l`estimation de la température minimale de croissance de Listeria monocytogenes

S. Charles-Bajard, Jean-Pierre Flandrois, R. Tomassone

Revue de Statistique Appliquée . LI : 59-71

Journal article

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MgtC as a horizontally-acquired virulence factor of intracellular bacterial pathogens: evidence from molecular phylogeny and comparative genomics.

Anne-Béatrice Blanc-Potard, Bénédicte Lafay

Journal of Molecular Evolution . 57 ( 4 ) : 479-86

DOI: 10.1007/s00239-003-2496-4

Journal article

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

Emmanuelle Lerat, Vincent Daubin, Nancy Moran

PLoS Biology . 1 ( 1 ) : 101-109

DOI: 10.1371/journal.pbio.0000019

Journal article

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Sequence divergence within transposable element families in the Drosophila melanogaster genome

E. Lerat, C. Rizzon, C. Biémont

Genome Research . 13 : 1889-1896

Journal article

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Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere, C. Combet, Simon Penel, Christophe Blanchet, J. Thioulouse, C. Geourjon...

Nucleic Acids Research . 31 ( 13 ) : 3393-3399

DOI: 10.1093/nar/gkg530

Journal article

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Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

Carène Rizzon, Edwige Martin, Gabriel Marais, Laurent Duret, Laurent Ségalat, Christian Biémont

Genetics . 165 ( 3 ) : 1127-35

Journal article

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ROSO: a software to search optimized oligonucleotide probes for microarrays

Nancie Reymond, Hubert Charles, Guillaume Beslon, Laurent Duret, Jean-Michel Fayard

14. Rencontres Régionales de la Recherche .

Poster

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Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Jean-Pierre Rouault, Olga Assossou, Franã§oise Besson, Florence Persat, Christine Brisson, Laurent Duret...

FEMS Microbiology Letters . 224 ( 2 ) : 161-168

DOI: 10.1016/S0378-1097(03)00479-8

Journal article

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Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

O. Assossou, F. Besson, J.P. Rouault, F. Persat, C. Brisson, L. Duret...

FEMS Microbiology Letters . 224 : 161-168.

DOI: 10.1016/S0378-1097(03)00479-8

Journal article

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Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

C. Rizzon, E. Martin, G. Marais, L. Duret, L. Segalat, C. Biemont

Genetics . ( 165 ) : 1127-1135

Journal article

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Orphan gene finding - An exon assembly approach

Philippe Blayo, Pierre Rouzé, Marie-France Sagot

Theoretical Computer Science . 290 ( 1 ) : 1407-1431

Journal article

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Pattern inference under many guises

M.-F. Sagot, Y. Wakabayashi

incollection . -- : 245-288

Journal article

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Use of Correspondence Discriminant Analysis to predict the subcellular location of bacterial proteins

G. Perrière, J. Thioulouse

Computer Methods and Programs in Biomedicine . 70 : 99-105

Journal article

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Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

A.C. Culhane, G. Perrière, D.G. Higgins

BMC Bioinformatics . 4 : 1-15

Journal article

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BIBI a bioinformatics bacterial identification tool

G. Devulder, G. Perrière, F. Baty, Jean-Pierre Flandrois

Journal of Clinical Microbiology . 41 : 1785-1787

Journal article

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RTKdb: database of Receptor Tyrosine Kinase.

Julien Grassot, Guy Mouchiroud, Guy Perrière

Nucleic Acids Research . 31 ( 1 ) : 353-8

Journal article

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A method to study the microscale 3-D spatial distribution of Bacteria in soil.

A. Dechesne, C. Pallud, D. Debouzie, Jean-Pierre Flandrois, J.P. Gaudet, G.L. Grundmann

Mycological Research . 107 : 1221-1230

Journal article

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Phylogenetic analysis of proteins homologous to the Salmonella MgtC virulence factor

Anne-Béatrice Blanc-Potard, Bénédicte Lafay

ASM Conference on Salmonella: Pathogenesis, Epidemiology, and Vaccine Development .

Conference paper

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A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

A. Dechesne, C. Pallud, D. Debouzie, J. P. Flandrois, T. M. Vogel, J. P. Gaudet...

Soil Biology and Biochemistry . 35 ( 12 ) : 1537-1546

DOI: 10.1016/S0038-0717(03)00243-8

Journal article

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Y-chromosomal evidence for a strong reduction in male population size of Yakuts

Brigitte Pakendorf, Bharti Morar, Larissa A Tarskaia, Manfred Kayser, Himla Soodyall, Alexander Rodewald...

Human Genetics . 110 ( 2 ) : 198-200

DOI: 10.1007/s00439-001-0664-4

Journal article

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Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

G. Piganeau, Dominique Mouchiroud, L. Duret, Christian Gautier

Journal of Molecular Evolution . 54 : 129-133.

Journal article

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Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants

L. Duret

Bioinformatics . 18 : S91-S91

Journal article

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Further thoughts on the syntenic distance between genomes

N. Pisanti, M.-F. Sagot

Algorithmica . 34 : 157-180

Journal article

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Gene finding in eukaryotes

C. Mathé, Thomas Schiex, Pierre Rouzé, Philippe Blayo, Marie-France Sagot

Cloning and expression technologies . : 27-43

Book chapter

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Vincent Daubin, Manolo Gouy, G. Perrière

Genome Research . 12 : 1080-1090

DOI: 10.1101/gr.187002

Journal article

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Between-group analysis of microarray data

A.C. Culhane, G. Perrière, E.C. Considine, T.G. Cotter, D.G. Higgins

Bioinformatics . 18 : 1600-1608

Journal article

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Use and misuse of correspondence analysis in codon usage studies

G. Perrière, J. Thioulouse

Nucleic Acids Research . 30 : 4548-4555

Journal article

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Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

C. Rizzon, Gabriel Marais, Manolo Gouy, C. Biémont

Genome Research . 12 : 400-407

DOI: 10.1101/gr.210802

Journal article

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What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia

B. Lamy, Pascal Roy, G. Carret, Jean-Pierre Flandrois, Marie Laure Delignette-Muller

Clinical Infectious Diseases . 35 ( 7 ) : 842-850

DOI: 10.1086/342383

Journal article

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Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths

Marie Cornu, Martin Kalmokoff, Jean-Pierre Flandrois

International Journal of Food Microbiology . 73 ( 2-3 ) : 261-274

DOI: 10.1016/S0168-1605(01)00658-4

Journal article

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