
Quantitative and Evolutionary Ecology of Communities Group
Thioulouse Jean
Directeur de recherche
CNRS
Mendel Building, 1st floor. Office 11.048
Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/
Reproducible research : A series of paper with graphs and computations reproducibility:
https://jthome.thioulouse.fr/Reproducible_Research/
https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/
Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO
ORCID ID: https://orcid.org/0000-0001-7664-05980
IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse
ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1
Evol. Biol. 2021 paper reproducibility:
Overcoming the Spurious Groups Problem in Between-Group PCA
Research activity
My research activities are centred around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.
The ade4 package for R :ade4
The adegraphics package for R :adegraphics
The ade4TkGUI package for R :ade4TkGUI
Publications
Display of 31 to 60 publications on 168 in total
Méthodes d'analyse multivariée pour l'étude de l'influence de la mycorhizosphère sur la structure et le fonctionnement des communautés bactériennes du sol
Des champignons symbiotiques contre la désertification. Ecosystèmes mediterranéens, tropicaux et insulaires . 978-2-7099-1949-4 : 474-508
Book chapter
see the publicationThe exotic legume tree species, Acacia mearnsii, alters microbial soil functionalities and the early development of a native tree species, Quercus suber, in North Africa
Soil Biology and Biochemistry . 65 : 172--179
Journal article
see the publicationEctomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings
Soil Biology and Biochemistry . 57 : 468-476
Journal article
see the publicationAustralian acacia introduction to rehabilitate degraded ecosystems is it free of environmental risks?
Bois et Forêts des Tropiques . 318 ( 4 ) : 59-65
Journal article
see the publicationMultivariate analyses in soil microbial ecology: a new paradigm
Environmental and Ecological Statistics . 19 ( 4 ) : 499--520
Journal article
see the publicationResponse of native soil microbial functions to the controlled mycorrhization of an exotic tree legume, Acacia holosericea in a Sahelian ecosystem
Mycorrhiza . 22 ( 3 ) : 175--187
Journal article
see the publicationRestoring native forest ecosystems after exotic tree plantation in Madagascar: combination of the local ectotrophic species Leptolena bojeriana and Uapaca bojeri mitigates the negative influence of the exotic species Eucalyptus camaldulensis and Pinus pat
Biological Invasions . 14 ( 11 ) : 2407--2421
Journal article
see the publicationSpatial processes driving soil microbial community assembly on a wide scale
4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment .
Conference paper
see the publicationCommunity ecology in the age of multivariate multiscale spatial analysis
Ecological monographs . 82 ( 3 ) : 257 - 275
DOI: 10.1890/11-1183.1
Journal article
see the publicationNurse shrubs increased the early growth of Cupressus seedling by enhancing belowground mutualism ans doil microbial activity
Soil Biology and Biochemistry . 43 ( 10 ) : 2160-2168
Journal article
see the publicationLarge trends in French topsoil characteristics are revealed by spatially constrained multivariate analysis
Geoderma . 161 : 107-114
Journal article
see the publicationDiversity, Geographic Distribution, and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite, Dermanyssus gallinae
Journal of Medical Entomology . 48 ( 4 ) : 788-796
DOI: 10.1603/ME10113
Journal article
see the publicationBiogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management
Global Ecology and Biogeography . 20 : 641-652
Journal article
see the publicationSIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS
Annals of Applied Statistics . 5 ( 4 ) : 2300-2325
DOI: 10.1214/10-AOAS372
Journal article
see the publicationBiogeography of soil microbial communities: a review and a description of the ongoing french national initiative
Sustainable Agriculture Volume 2 . 978-94-007-0393-3 : 857-865
Book chapter
see the publicationBiogeographical patterns of soil molecular microbial biomass
Ecology of soil microorganisms : microbes as important drivers of soil processes . : 1 p.
Conference paper
see the publicationDiversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae
Journal of Medical Entomology . 48 : 788-796
Journal article
see the publicationInsertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris
Journal of Clinical Microbiology . 49 ( 1 ) : 315-324
DOI: 10.1128/JCM.01261-10
Journal article
see the publicationSoil fungal communities ecology: a biogeographical approach
Ecology of soil Microorganisms Conference . : 1 p.
Conference paper
see the publicationBiogeographical patterns of soil microbial communities at the scale of French metropolitan territory
13. International Symposium on Microbial Ecology ISME 13 . : 1 p.
Conference paper
see the publicationBiogeography of soil microbial communities: a review and a description of the ongoing french national initiative
Agronomy for Sustainable Development . 30 ( 2 ) : 359-365
DOI: 10.1051/agro/2009033
Journal article
see the publicationBiogéographie Microbienne: mythe ou réalité ?
Ecologie 2010 . : n.p.
Conference paper
see the publicationOnline Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data
The R Journal . 2 ( 1 ) : 44-52
Journal article
see the publicationA phylogenomic analysis of bacterial helix-turn-helix transcription factors
FEMS Microbiology Reviews . 33 ( 2 ) : 411-429
Journal article
see the publicationDistribution et déterminisme de la diversité des communautés de champignons telluriques à l'échelle de trois régions françaises
4ème colloque de l'Association Francophone d'Ecologie Microbienne : le livre des résumés . : 91
Conference paper
see the publicationControlled ectomycorrhization of an exotic legume tree species Acacia holosericea affects the structure of root nodule bacteria community and their symbiotic effectiveness on Faidherbia albida a native Sahelian Acacia
Soil Biology and Biochemistry . 41(6) : 1245-1252
Journal article
see the publicationBiogeographical patterns of soil bacterial communities
Environmental Microbiology Reports . 1 ( 4 ) : 251 - 255
Journal article
see the publicationMonitoring the Development of Nurse Plant Species to Improve the Performances of Reforestation Programs in Mediterranean Areas
incollection . -- : 443-450
Journal article
see the publicationAphylogenomic analysis of bacterial helix^turn^helix transcription factors
FEMS Microbiology Reviews . 33 : 411-429
Journal article
see the publicationMicrobial-biogeography at the scale of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)
BAGECO10 .
Conference paper
see the publication