Evolutionary Ecology

Quantitative and Evolutionary Ecology of Communities Group

Thioulouse Jean

Directeur de recherche

CNRS

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 43 27 56

Site internet

Email

Mendel Building, 1st floor. Office 11.048

Bibliography Web page: You can visit my bibliography web page here: https://jthome.thioulouse.fr/ref/

Reproducible research : A series of paper with graphs and computations reproducibility:

https://jthome.thioulouse.fr/Reproducible_Research/

https://pbil.univ-lyon1.fr/members/thioulouse/RRBibJT/

Google Scholar: https://scholar.google.com/citations?hl=fr&user=1sjOJvSAAAAJO

ORCID ID: https://orcid.org/0000-0001-7664-05980

IdHAL: https://cv.archives-ouvertes.fr/jean-thioulouse

ade4 book: Multivariate Analysis of Ecological Data with ade4
https://link.springer.com/book/10.1007/978-1-4939-8850-1

Evol. Biol. 2021 paper reproducibility:

Overcoming the Spurious Groups Problem in Between-Group PCA

Research activity

My research activities are centred  around innovation in the field of statistical methods in Biology. During the last years, I was mainly interested in statistical analysis methods used for studying bacterial diversity. I have also pursued methodological developments in software, leading to the distribution of several packages for R, and in consulting and teaching in several areas.

The ade4 package for R :ade4

The adegraphics package for R :adegraphics

The ade4TkGUI package for R :ade4TkGUI

 

Publications

Display of 31 to 60 publications on 167 in total

The exotic legume tree species, Acacia mearnsii, alters microbial soil functionalities and the early development of a native tree species, Quercus suber, in North Africa

I. Boudiaf, E. Baudoin, H. Sanguin, A. Beddiar, Jean Thioulouse, A. Galiana...

Soil Biology and Biochemistry . 65 : 172--179

Journal article

see the publication

Ectomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings

N. Diagne, J. Thioulouse, H. Sanguin, Y. Prin, T. Krasova-Wade, S. Sylla...

Soil Biology and Biochemistry . 57 : 468-476

DOI: 10.1016/j.soilbio.2012.08.030

Journal article

see the publication

Australian acacia introduction to rehabilitate degraded ecosystems is it free of environmental risks?

Robin Duponnois, Ezekiel Baudoin, Hervé Sanguin, Jean Thioulouse, Christine Le Roux, Estelle Tournier...

Bois et Forêts des Tropiques . 318 ( 4 ) : 59-65

Journal article

see the publication

Response of native soil microbial functions to the controlled mycorrhization of an exotic tree legume, Acacia holosericea in a Sahelian ecosystem

A. Bilgo, Sk. Sangare, Jean Thioulouse, Y Prin, V. Hien, A. Galiana...

Mycorrhiza . 22 ( 3 ) : 175--187

DOI: 10.1007/s00572-011-0390-2

Journal article

see the publication

Restoring native forest ecosystems after exotic tree plantation in Madagascar: combination of the local ectotrophic species Leptolena bojeriana and Uapaca bojeri mitigates the negative influence of the exotic species Eucalyptus camaldulensis and Pinus pat

R. Baohanta, Jean Thioulouse, H. Ramanankierana, Y. Prin, R. Rasolomampianina, E. Baudoin...

Biological Invasions . 14 ( 11 ) : 2407--2421

DOI: 10.1007/s10530-012-0238-5

Journal article

see the publication

Multivariate analyses in soil microbial ecology: a new paradigm

Jean Thioulouse, Y. Prin, R. Duponnois

Environmental and Ecological Statistics . 19 ( 4 ) : 499--520

DOI: 10.1007/s10651-012-0198-z

Journal article

see the publication

Spatial processes driving soil microbial community assembly on a wide scale

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas N. Saby, Jean Thioulouse, Claudy C. Jolivet, Mélanie M. Lelievre...

4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment .

Conference paper

see the publication

Community ecology in the age of multivariate multiscale spatial analysis

S. Dray, R. Pelissier, P. Couteron, M. -J. Fortin, P. Legendre, P. R. Peres-Neto...

Ecological monographs . 82 ( 3 ) : 257 - 275

DOI: 10.1890/11-1183.1

Journal article

see the publication

Large trends in French topsoil characteristics are revealed by spatially constrained multivariate analysis

D. Arrouays, N.P.A. Saby, Jean Thioulouse, C. Jolivet, Line Boulonne, C. Ratié

Geoderma . 161 : 107-114

DOI: 10.1016/j.geoderma.2010.12.002

Journal article

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Diversity, Geographic Distribution, and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite, Dermanyssus gallinae

C. Valiente-Moro, J. Thioulouse, C. Chauve, Lionel Zenner

Journal of Medical Entomology . 48 ( 4 ) : 788-796

DOI: 10.1603/ME10113

Journal article

see the publication

Nurse shrubs increased the early growth of Cupressus seedling by enhancing belowground mutualism ans doil microbial activity

R. Duponnois, L. Ouahmane, A. Kane, Jean Thioulouse, M. Hafidi, A. Boumezzough...

Soil Biology and Biochemistry . 43 ( 10 ) : 2160-2168

DOI: 10.1016/j.soilbio.2011.06.020

Journal article

see the publication

Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management

S. Dequiedt, Nicolas P. A. Saby, M. Lelievre, C. Jolivet, J. Thioulouse, B. Toutain...

Global Ecology and Biogeography . 20 : 641-652

DOI: 10.1111/j.1466-8238.2010.00628.x

Journal article

see the publication

SIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS

J. Thioulouse

Annals of Applied Statistics . 5 ( 4 ) : 2300-2325

DOI: 10.1214/10-AOAS372

Journal article

see the publication

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

Lionel Ranjard, Samuel Dequiedt, Claudy Jolivet, Nicolas Saby, Jean Thioulouse, Jérôme Harmand...

Sustainable Agriculture Volume 2 . 978-94-007-0393-3 : 857-865

DOI: 10.1007/978-94-007-0394-0_37

Book chapter

see the publication

Diversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae

C. Valiente-Moro, J. Thioulouse, C. Chauve, L. Zenner

Journal of Medical Entomology . 48 : 788-796

Journal article

see the publication

Insertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris

Mike Vergnes, Christophe Ginevra, Elisabeth Kay, Philippe Normand, Jean Thioulouse, Sophie Jarraud...

Journal of Clinical Microbiology . 49 ( 1 ) : 315-324

DOI: 10.1128/JCM.01261-10

Journal article

see the publication

Biogeographical patterns of soil molecular microbial biomass

Samuel Dequiedt, Nicolas N. Saby, Mélanie M. Lelievre, Claudy C. Jolivet, Jean Thioulouse, Benoit B. Toutain...

Ecology of soil microorganisms : microbes as important drivers of soil processes . : 1 p.

Conference paper

see the publication

Soil fungal communities ecology: a biogeographical approach

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas N. Saby, Jean Thioulouse, Claudy C. Jolivet, Mélanie M. Lelievre...

Ecology of soil Microorganisms Conference . : 1 p.

Conference paper

see the publication

Biogeographical patterns of soil microbial communities at the scale of French metropolitan territory

Samuel S. Dequiedt, Nicolas Chemidlin Prévost-Bouré, Nicolas Saby, Jean Thioulouse, Mélanie M. Lelievre, Claudy C. Jolivet...

13. International Symposium on Microbial Ecology ISME 13 . : 1 p.

Conference paper

see the publication

Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative

Lionel Ranjard, Samuel S. Dequiedt, Claudy C. Jolivet, Nicolas P.A. Saby, Jean Thioulouse, Jérome Harmand...

Agronomy for Sustainable Development . 30 ( 2 ) : 359-365

DOI: 10.1051/agro/2009033

Journal article

see the publication

Biogéographie Microbienne: mythe ou réalité ?

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas N. Saby, Mélanie M. Lelievre, Claudy C. Jolivet, Dominique D. Arrouays...

Ecologie 2010 . : n.p.

Conference paper

see the publication

Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data

J. Thioulouse, C. Valiente Moro, L. Zenner

The R Journal . 2 ( 1 ) : 44-52

Journal article

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A phylogenomic analysis of bacterial helix-turn-helix transcription factors

C. L. Santos, F. Tavares, J. Thioulouse, Philippe Normand

FEMS Microbiology Reviews . 33 ( 2 ) : 411-429

DOI: 10.1111/j.1574-6976.2008.00154.x

Journal article

see the publication

Biogeographical patterns of soil bacterial communities

Samuel Dequiedt, Jean Thioulouse, Claudy C. Jolivet, Nicolas N. Saby, Mélanie Lelièvre, Pierre-Alain Maron...

Environmental Microbiology Reports . 1 ( 4 ) : 251 - 255

DOI: 10.1111/j.1758-2229.2009.00040.x

Journal article

see the publication

Monitoring the Development of Nurse Plant Species to Improve the Performances of Reforestation Programs in Mediterranean Areas

R. Duponnois, M. Hafidi, J. Thioulouse, A. Galiana, L. Ouahmane, B. Dreyfus...

incollection . -- : 443-450

Journal article

see the publication

Aphylogenomic analysis of bacterial helix^turn^helix transcription factors

C.L. Santos, F. Tavares, J. Thioulouse, P. Normand

FEMS Microbiology Reviews . 33 : 411-429

Journal article

see the publication

Distribution et déterminisme de la diversité des communautés de champignons telluriques à l'échelle de trois régions françaises

Nicolas Chemidlin Prévost-Bouré, Samuel S. Dequiedt, Rémy Doyen, Mélanie M. Lelievre, Claudy C. Jolivet, Manuel Martin...

4ème colloque de l'Association Francophone d'Ecologie Microbienne : le livre des résumés . : 91

Conference paper

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Controlled ectomycorrhization of an exotic legume tree species Acacia holosericea affects the structure of root nodule bacteria community and their symbiotic effectiveness on Faidherbia albida a native Sahelian Acacia

A. Faye, T. Krasova-Wabe, M. Thiao, J. Thioulouse, M. Neyra, Y. Prin...

Soil Biology and Biochemistry . 41(6) : 1245-1252

Journal article

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Patterns biogéographiques de la diversité bactérienne des sols à l'échelle du territoire national

Samuel S. Dequiedt, Mélanie M. Lelievre, Claudy C. Jolivet, Manuel M. Martin, Nicolas N. Saby, Benoit B. Toutain...

Congrès AFEM (Association Francophone pour l'Ecologie Microbienne . : n.p.

Conference paper

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Microbial-biogeography at the scale of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS)

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Jean Thioulouse, Claudy C. Jolivet, Nicolas N. Saby, Mélanie M. Lelievre...

BAGECO10 .

Conference paper

see the publication