GECO Génomique Computationnelle et Evolutive

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

A.C. Culhane, G. Perrière, D.G. Higgins

BMC Bioinformatics . 4 : 1-15

2003

Article dans une revue

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BIBI a bioinformatics bacterial identification tool

G. Devulder, G. Perrière, F. Baty, Jean-Pierre Flandrois

Journal of Clinical Microbiology . 41 : 1785-1787

2003

Article dans une revue

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RTKdb: database of Receptor Tyrosine Kinase.

Julien Grassot, Guy Mouchiroud, Guy Perrière

Nucleic Acids Research . 31 ( 1 ) : 353-8

2003

Article dans une revue

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A method to study the microscale 3-D spatial distribution of Bacteria in soil.

A. Dechesne, C. Pallud, D. Debouzie, Jean-Pierre Flandrois, J.P. Gaudet, G.L. Grundmann

Mycological Research . 107 : 1221-1230

2003

Article dans une revue

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Phylogenetic analysis of proteins homologous to the Salmonella MgtC virulence factor

Anne-Béatrice Blanc-Potard, Bénédicte Lafay

ASM Conference on Salmonella: Pathogenesis, Epidemiology, and Vaccine Development .

2003

Acte de congrès

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A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

A. Dechesne, C. Pallud, D. Debouzie, J. P. Flandrois, T. M. Vogel, J. P. Gaudet...

Soil Biology and Biochemistry . 35 ( 12 ) : 1537-1546

DOI: 10.1016/S0038-0717(03)00243-8

2003

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Sex chromosomes: how X-Y recombination stops

Gabriel Marais, N. Galtier

Current Biology . 13 : R641-R643

2003

Article dans une revue

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Genome evolution: recombination speeds up adaptive evolution

Gabriel Marais, B. Charlesworth

Current Biology . 13 : R68-R70

2003

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Biased gene conversion: implications for genome and sex evolution

Gabriel Marais

Trends in Genetics . 19 : 330-338

2003

Article dans une revue

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Y-chromosomal evidence for a strong reduction in male population size of Yakuts

Brigitte Pakendorf, Bharti Morar, Larissa A Tarskaia, Manfred Kayser, Himla Soodyall, Alexander Rodewald...

Human Genetics . 110 ( 2 ) : 198-200

DOI: 10.1007/s00439-001-0664-4

2002

Article dans une revue

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Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

G. Piganeau, Dominique Mouchiroud, L. Duret, Christian Gautier

Journal of Molecular Evolution . 54 : 129-133.

2002

Article dans une revue

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Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants

L. Duret

Bioinformatics . 18 : S91-S91

2002

Article dans une revue

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Further thoughts on the syntenic distance between genomes

N. Pisanti, M.-F. Sagot

Algorithmica . 34 : 157-180

2002

Article dans une revue

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Gene finding in eukaryotes

C. Mathé, Thomas Schiex, Pierre Rouzé, Philippe Blayo, Marie-France Sagot

Cloning and expression technologies . : 27-43

2002

Chapitre d'ouvrage

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Vincent Daubin, Manolo Gouy, G. Perrière

Genome Research . 12 : 1080-1090

DOI: 10.1101/gr.187002

2002

Article dans une revue

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Between-group analysis of microarray data

A.C. Culhane, G. Perrière, E.C. Considine, T.G. Cotter, D.G. Higgins

Bioinformatics . 18 : 1600-1608

2002

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Use and misuse of correspondence analysis in codon usage studies

G. Perrière, J. Thioulouse

Nucleic Acids Research . 30 : 4548-4555

2002

Article dans une revue

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Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

C. Rizzon, Gabriel Marais, Manolo Gouy, C. Biémont

Genome Research . 12 : 400-407

DOI: 10.1101/gr.210802

2002

Article dans une revue

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What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia

B. Lamy, Pascal Roy, G. Carret, Jean-Pierre Flandrois, Marie Laure Delignette-Muller

Clinical Infectious Diseases . 35 ( 7 ) : 842-850

DOI: 10.1086/342383

2002

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Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths

Marie Cornu, Martin Kalmokoff, Jean-Pierre Flandrois

International Journal of Food Microbiology . 73 ( 2-3 ) : 261-274

DOI: 10.1016/S0168-1605(01)00658-4

2002

Article dans une revue

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Archaeal phylogeny based on ribosomal proteins

O. Matte-Tailliez, Céline Brochier-Armanet, Patrick Forterre, H. Philippe

Mol Biol Evol . 19 : 631-639

2002

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Eubacterial phylogeny based on translational apparatus proteins

Céline Brochier, Eric Bapteste, David Moreira, Hervé Philippe

Trends in Genetics . 18 ( 1 ) : 1-5

DOI: 10.1016/s0168-9525(01)02522-7

2002

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Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium.

Matthew A. Parker, Benedicte Lafay, Jeremy J. Burdon, Peter van Berkum

Microbiology . 148 ( Pt 8 ) : 2557-65

2002

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ROSO: A software to search optimized oligonucleotide probes for microarrays

Hubert Charles, Nancie Reymond, Guillaume Beslon, Laurent Duret, Jean-Michel Fayard

COST853: Agricultural Biomarkers for Array-Technology .

2002

Acte de congrès

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ROSO : A Software to Search Optimized Oligonucleotide Probes for Microarrays

Nancie Reymond, Hubert Charles, Guillaume Beslon, Laurent Duret, Jean-Michel Fayard

10. International Conference on Intelligent Systems for Molecular Biology (ISMB) .

2002

Poster

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Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.

C. Chureau, M. Prissette, A. Bourdet, Valérie Barbe, L. Cattolico, L. Jones...

Genome Research . 12 : 894-908

2002

Article dans une revue

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Vanishing GC-Rich Isochores in Mammalian Genomes

L. Duret, M. Sémon, G. Piganeau, Dominique Mouchiroud, N. Galtier

Genetics . 162 : 1837-1848

2002

Article dans une revue

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Comparative sequence analysis of the X-inactivation center region in mouse human and bovine

C. Chureau, M. Prissette, A. Bourdet, Valérie Barbe, Laurence Cattolico, L. Jones...

Genome Research . 12 : 894-908.

2002

Article dans une revue

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Evolution of synonymous codon usage in metazoans

L. Duret

Current Opinion in Genetics and Development . 12 : 640-649

2002

Article dans une revue

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A Basis for Repeated Motifs in Pattern Discovery and Text Mining

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

2002

Rapport

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GECO Génomique Computationnelle et Evolutive

Equipe Bioinformatique, Phylogénie et Génomique Évolutive

Equipe Baobab

Publications

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

BIBI a bioinformatics bacterial identification tool

RTKdb: database of Receptor Tyrosine Kinase.

A method to study the microscale 3-D spatial distribution of Bacteria in soil.

Phylogenetic analysis of proteins homologous to the Salmonella MgtC virulence factor

A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

Sex chromosomes: how X-Y recombination stops

Genome evolution: recombination speeds up adaptive evolution

Biased gene conversion: implications for genome and sex evolution

Y-chromosomal evidence for a strong reduction in male population size of Yakuts

Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants

Further thoughts on the syntenic distance between genomes

Gene finding in eukaryotes

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Between-group analysis of microarray data

Use and misuse of correspondence analysis in codon usage studies

Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

What is the relevance of obtaining multiple blood samples for culture? A comprehensive model to optimize the strategy for diagnosing bacteremia

Modelling the competitive growth of Listeria monocytogenes and Listeria innocua in enrichment broths

Archaeal phylogeny based on ribosomal proteins

Eubacterial phylogeny based on translational apparatus proteins

Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium.

ROSO: A software to search optimized oligonucleotide probes for microarrays

ROSO : A Software to Search Optimized Oligonucleotide Probes for Microarrays

Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.

Vanishing GC-Rich Isochores in Mammalian Genomes

Comparative sequence analysis of the X-inactivation center region in mouse human and bovine

Evolution of synonymous codon usage in metazoans

A Basis for Repeated Motifs in Pattern Discovery and Text Mining