Gouy Manolo

In Retrospect: Lamarck's treatise at 200

Dan Graur, Manolo Gouy, David Wool

Nature . 460 ( 7256 ) : 688-689

DOI: 10.1038/460688a

2009

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Databases of Homologous Gene Families for Comparative Genomics

Simon Penel, Anne-Muriel Arigon Chifolleau, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, L. Duret...

BMC Bioinformatics . 10 (Suppl.6) :S3 : 13

DOI: 10.1186/1471-2105-10-S6-S3

2009

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Ancient bacteria liked it hot

M. Gouy, M. Chaussidon

Nature . 451 : 635-636

DOI: 10.1038/451635a

2008

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Remote access to ACNUC nucleotide and protein sequence databases at PBIL

Manolo Gouy, Stephane Delmotte

Biochimie . 90 ( 4 ) : 555-562

DOI: 10.1016/j.biochi.2007.07.003

2008

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Polymorphism of the Staphylococcus aureus Panton-Valentine LeukocidinGenes and Its Possible Link with the Fitness of Community-Associated Methicillin-Resistant S. aureus

O. Dumitrescu, A. Tristan, H. Meugnier, M. Bes, Manolo Gouy, J. Etienne...

Journal of Infectious Diseases . 198 ( 5 ) : 792-794

DOI: 10.1086/590914

2008

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Automatic Identification of Large Collections of Protein-Coding or rRNA Sequences

Anne-Muriel Arigon Chifolleau, Guy Perrière, Manolo Gouy

Biochimie . 90 ( 4 ) : 609-614

DOI: 10.1016/j.biochi.2007.08.006

2008

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Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Bastien Boussau, Laurent Guéguen, Manolo Gouy

BMC Evolutionary Biology . 8 : 272-272

DOI: 10.1186/1471-2148-8-272

2008

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Parallel Adaptations to High Temperatures in the Archean Eon

Bastien Boussau, Samuel Blanquart, Anamaria Necsulea, Nicolas Lartillot, Manolo Gouy

Nature . 456 ( 7224 ) : 942-945

DOI: 10.1038/nature07393

2008

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Efficient Likelihood Computations with Nonreversible Models of Evolution

Bastien Boussau, Manolo Gouy

Systematic Biology . 55 ( 5 ) : 756-768

DOI: 10.1080/10635150600975218

2006

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Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains.

Julien Grassot, Manolo Gouy, Guy Perrière, Guy Mouchiroud

Molecular Biology and Evolution . 23 ( 6 ) : 1232-41

DOI: 10.1093/molbev/msk007

2006

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Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments

T. Lefébure, C.J. Douady, Manolo Gouy, P. Trontel, J. Briolay, J. Gibert

Molecular Ecology . 15 : 1797-1806

DOI: 10.1111/j.1365-294X.2006.02888.x

2006

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Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation

T. Lefébure, C.J. Douady, Manolo Gouy, J. Gibert

Molecular Phylogenetics and Evolution . 40 ( 2 ) : 435-447

DOI: 10.1016/j.ympev.2006.03.014

2006

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HoSeql : automated homologous sequence identification in gene family databases

Anne-Muriel Arigon Chifolleau, G. Perrière, Manolo Gouy

Bioinformatics . 22 ( 14 ) : 1786-1787

DOI: 10.1093/bioinformatics/btl179

2006

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Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard, L. Duret, Simon Penel, Manolo Gouy, F. Rechenmann, G. Perrière

Bioinformatics . 21 ( 11 ) : 2596-603

DOI: 10.1093/bioinformatics/bti325

2005

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Phylogenomics of Life-Or-Death Switches in Multicellular Animals: Bcl-2, BH3-Only, and BNip Families of Apoptotic Regulators

A. Aouacheria, F. Brunet, Manolo Gouy

Molecular Biology and Evolution . 22 ( 12 ) : 2395-2416

DOI: 10.1093/molbev/msi234

2005

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In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

A. Aouacheria, V. Navratil, W. Wen, M. Jiang, Dominique Mouchiroud, Christian Gautier...

Oncogene . 24 : 6133-6142

DOI: 10.1038/sj.onc.1208745

2005

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Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity

V. Huguet, Manolo Gouy, P. Normand, J.F. Zimpfer, M.P. Fernandez

Molecular Phylogenetics and Evolution . 34 ( 3 ) : 557-568

DOI: 10.1016/j.ympev.2004.11.018

2005

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Phylogeography and taxonomic status of Niphargus virei (subterranean amphipod).

T. Lefébure, Christophe Jean Douady, M. Gouy, P. Trontelj, J. Briolay, Janine Gibert

Proceedings on Symposium on World Subterranean Biodiversity . : 73-74

2005

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Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes

H. Aurell, Pierre Farge, H. Meugnier, Manolo Gouy, F. Forey, G. Lina...

Applied and Environmental Microbiology . 71 : 282-289

DOI: 10.1128/AEM.71.1.282-289.2005

2005

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Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

A. Calteau, Manolo Gouy, G. Perrière

Journal of Molecular Evolution . 60 ( 5 ) : 557-65

DOI: 10.1007/s00239-004-0094-8

2005

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Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes

F. Thomarat, Christian Vivarès, Manolo Gouy

Journal of Molecular Evolution . 59 : 780-791

DOI: 10.1007/s00239-004-2673-0

2004

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Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences.

Frédérique Le Roux, Mélanie Gay, Christophe Lambert, Jean-Louis Nicolas, Manolo Gouy, Franck Berthe

Diseases of Aquatic Organisms . 58 ( 2-3 ) : 143-150

DOI: 10.3354/dao058143

2004

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Invertebrate Data Predict an Early Emergence of Vertebrate Fibrillar Collagen Clades and an Anti-incest Model

Abdel Aouacheria, Caroline Cluzel, Claire Lethias, Manolo Gouy, Robert Garrone, Jean-Yves Exposito

Journal of Biological Chemistry . 279 ( 46 ) : 47711-47719

DOI: 10.1074/jbc.M408950200

2004

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Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere, C. Combet, Simon Penel, Christophe Blanchet, J. Thioulouse, C. Geourjon...

Nucleic Acids Research . 31 ( 13 ) : 3393-3399

DOI: 10.1093/nar/gkg530

2003

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Vincent Daubin, Manolo Gouy, G. Perrière

Genome Research . 12 : 1080-1090

DOI: 10.1101/gr.187002

2002

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Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

C. Rizzon, Gabriel Marais, Manolo Gouy, C. Biémont

Genome Research . 12 : 400-407

DOI: 10.1101/gr.210802

2002

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Automatic RNA secondary structure prediction with a comparative approach

F. Tahi, Manolo Gouy, M. Regnier

Journal of Computational Chemistry . 26 ( 5 ) : 521-530

DOI: 10.1016/S0097-8485(02)00012-8

2002

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Functional and evolutionary analysis of a eukaryotic parasitic genome

Christian Vivarès, Manolo Gouy, F. Thomarat, G. Metenier

Current Opinion in Microbiology . 5 : 499-505

DOI: 10.1016/S1369-5274(02)00356-9

2002

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Lipid phosphate phosphatases in Arabidopsis. Regulation of the AtLPP1 gene in response to stress

O. Pierrugues, C. Brutesco, J. Oshiro, Manolo Gouy, Y. Deveaux, G.M. Carman...

Journal of Biological Chemistry . 276 ( 23 ) : 20300-20308

DOI: 10.1074/jbc.M009726200

2001

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Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis

A. Aouacheria, Estelle Arnaud, S. Venet, P. Lalle, M. Gouy, D. Rigal...

Oncogene . 20 : 5846-5855

DOI: 10.1038/sj.onc.1204740

2001

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Publications

In Retrospect: Lamarck's treatise at 200

Databases of Homologous Gene Families for Comparative Genomics

Ancient bacteria liked it hot

Remote access to ACNUC nucleotide and protein sequence databases at PBIL

Polymorphism of the Staphylococcus aureus Panton-Valentine LeukocidinGenes and Its Possible Link with the Fitness of Community-Associated Methicillin-Resistant S. aureus

Automatic Identification of Large Collections of Protein-Coding or rRNA Sequences

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Parallel Adaptations to High Temperatures in the Archean Eon

Efficient Likelihood Computations with Nonreversible Models of Evolution

Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains.

Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments

Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation

HoSeql : automated homologous sequence identification in gene family databases

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Phylogenomics of Life-Or-Death Switches in Multicellular Animals: Bcl-2, BH3-Only, and BNip Families of Apoptotic Regulators

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

Molecular phylogeny of Myricaceae: a reexamination of host-symbiont specificity

Phylogeography and taxonomic status of Niphargus virei (subterranean amphipod).

Clinical and environmental isolates of Legionella pneumophila serogroup 1 cannot be distinguished by sequence analysis of two surface protein genes and three housekeeping genes

Horizontal transfer of two operons coding for hydrogenases between bacteria and archaea.

Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes

Phylogenetic study and identification of Vibrio splendidus-related strains based on gyrB gene sequences.

Invertebrate Data Predict an Early Emergence of Vertebrate Fibrillar Collagen Clades and an Anti-incest Model

Integrated databanks access and sequence/structure analysis services at the PBIL.

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome

Automatic RNA secondary structure prediction with a comparative approach

Functional and evolutionary analysis of a eukaryotic parasitic genome

Lipid phosphate phosphatases in Arabidopsis. Regulation of the AtLPP1 gene in response to stress

Nrh, a human homologue of Nr-13 associates with Bcl-Xs and is an inhibitor of apoptosis