GECO Evolutionary and Computational Genomics

Baobab Group

Sagot Marie-France

Directrice de recherche

INRIA

Address: 43 bd du 11 novembre 1918
69622 VILLEURBANNE cedex

Tel: 33 04 72 44 82 38

Email

Publications

Display of 181 to 210 publications on 210 in total

Efficient Extraction of Structured Motifs Using Box-links

A. Carvalho, A.T. Freitas, A.L. Oliveira, M.-F. Sagot

International Symposium on String Processing and Information Retrieval : SPIRE . 3246 : 267-268

DOI: 10.1007/978-3-540-30213-1_37

Conference paper

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A first approach to finding common motifs with Gaps

Costas S. Iliopoulos, James Mchugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot

Prague Stringology Conference 2004 . : 88-97

Conference paper

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Novel tree edit operations for RNA secondary structure comparison

Julien Allali, Marie-France Sagot

Workshop on Algorithms in Bioinformatics 2004 . 3240 : 412--425

DOI: 10.1007/978-3-540-30219-3_35

Conference paper

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Sorting by reversals in subquadratic time

Eric Tannier, Marie-France Sagot

Report

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Longest repeated motif with a block of don't cares

Maxime Crochemore, Costas S. Iliopoulos, Manal Mohamed, Marie-France Sagot

6th Latin American Theoretical Informatics (LATIN'04) . 2976 : 271-278

DOI: 10.1007/978-3-540-24698-5_31

Conference paper

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A basis of tiling motifs for generating repeated patterns and its complexity for higher quorum

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

International Symposium on Mathematical Foundations of Computer Science 2003 . 2747 : 622-632

DOI: 10.1007/978-3-540-45138-9_56

Conference paper

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Orphan gene finding - An exon assembly approach

Philippe Blayo, Pierre Rouzé, Marie-France Sagot

Theoretical Computer Science . 290 ( 1 ) : 1407-1431

Journal article

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Pattern inference under many guises

M.-F. Sagot, Y. Wakabayashi

incollection . -- : 245-288

Journal article

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Further thoughts on the syntenic distance between genomes

N. Pisanti, M.-F. Sagot

Algorithmica . 34 : 157-180

Journal article

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Gene finding in eukaryotes

C. Mathé, Thomas Schiex, Pierre Rouzé, Philippe Blayo, Marie-France Sagot

Cloning and expression technologies . : 27-43

Book chapter

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A Basis for Repeated Motifs in Pattern Discovery and Text Mining

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot

Report

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Gene finding in eukaryotes

C. Mathé, Thomas Schiex, P. Rouzé, P. Blayo, M.-F. Sagot

incollection . -- : 27-43

Journal article

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Current methods of gene prediction their strengths and weaknesses

C. Mathé, M.-F. Sagot, Thomas Schiex, P. Rouzé

Nucleic Acids Research . 30 : 4103-4117

Journal article

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Occurrence probability of structured motifs in random sequences

S. Robin, J.J. Daudin, H. Richard, M.-F. Sagot, S. Schbath

Journal of Computational Biology . 9 ( 6 ) : 761-773

DOI: 10.1089/10665270260518254

Journal article

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Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification

Laurent Marsan, Marie-France Sagot

Journal of Computational Biology . 7 ( 1 ) : 345-360

Journal article

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Some approximation results for the maximum agreement forest problem

E. M. Rodrigues, Marie-France Sagot, Y. Wakabayashi

Approximation, Randomization and Combinatorial Optimization: Algorithms and Techniques (APPROX RANDOM 2001) . 2129 : 159-169

Conference paper

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Inferring regulatory elements from a whole genome. An application to the analysis of the genome of Helicobacter pylori sigma 80 family of promoter signals

A. Vanet, L. Marsan, A. Labigne, M.-F. Sagot

Journal of Molecular Biology . 297 : 335-353

Journal article

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Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification

L. Marsan, M.-F. Sagot

Journal of Computational Biology . 7 : 345-360

Journal article

see the publication

Infering regulatory elements from a whole genome. An application to the analysis of genome of $\itemize{Helicobacter Pylori}$ $\sigma_{80}$ family of promoter signals

A. Vanet, Laurent Marsan, A. Labigne, Marie-France Sagot

Journal of Molecular Biology . 297 ( 1 ) : 335-353

Journal article

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Promoter sequences and algorithmical methods for identifying them

A. Vanet, L. Marsan, M.-F. Sagot

Research in Microbiology . 150 : 779-799

Journal article

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Identifying satellites and periodic repetitions in biological sequences

M.-F. Sagot, E.W. Myers

Journal of Computational Biology . 5 : 539-554

Journal article

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Spelling Approximate Repeated or Common Motifs Using a Suffix Tree

M.-F. Sagot

incollection . 1380 : 374-390

Journal article

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Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes Mirror Repeats Pseudoknots and Triple Helices

M.-F. Sagot, Alain Viari

Annual Symposium on Combinatorial Pattern Matching (CPM) . 1264 : 224-246

DOI: 10.1007/3-540-63220-4_62

Conference paper

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A Double Combinatorial Approach to Discovering Patterns in Biological Sequences

M.-F. Sagot, Alain Viari

incollection . 1075 : 186-208

Journal article

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Searching for repeated words in a text allowing for mismatches and gaps

M-F. Sagot, V. Escalier, Alain Viari, H. Soldano

incollection . -- : 87-100

Journal article

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Finding flexible patterns in a text - An application to 3D matching

M-F. Sagot, Alain Viari, J. Pothier, H. Soldano

Computer Applications in the Biosciences . 11 : 59-70

Journal article

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Multiple Sequence Comparison:A Peptide Matching Approach

M-F. Sagot, Alain Viari, H. Soldano

incollection . 937 : 366-385

Journal article

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