GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 811 to 840 publications on 1379 in total

Iron-sulfur (Fe/S) protein biogenesis: phylogenomic and genetic studies of A-type carriers

D. Vinella, Céline Brochier-Armanet, L. Loiseau, E. Talla, F. Barras

PLoS Genetics . 5 : 261-268

Journal article

see the publication

Qri7/OSGEPL the mitochondrial version of the universal Kae1/YgjD protein is essential for mitochondrial genome maintenance

J. Oberto, N. Breuil, A. Hecker, F. Farina, Céline Brochier-Armanet, E. Culetto...

Nucleic Acids Research . 37 : 5343-52

Journal article

see the publication

Comparison of alignment free string distances for complete genome phylogeny

F. Guyon, Céline Brochier-Armanet, A. Guénoche

Advances in Data Analysis and Classification . 3 : 95-108

Journal article

see the publication

Full-Length Genome Characterization of a Novel Simian Immunodeficiency Virus Lineage (SIVolc) from Olive Colobus (Procolobus verus) and New SIVwrcPbb Strains from Western Red Colobus (Piliocolobus badius badius) from the Taï Forest in Ivory Coast

Florian Liegeois, Bénédicte Lafay, Pierre Formenty, Sabrina Locatelli, Valérie Courgnaud, Eric Delaporte...

Journal of Virology . 83 ( 1 ) : 428-439

DOI: 10.1128/JVI.01725-08

Journal article

see the publication

Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila.

Marie Fablet, Emmanuelle Lerat, Rita Rebollo, Béatrice Horard, Nelly Burlet, Sonia Martinez...

FASEB Journal . 23 ( 5 ) : 1482-9

DOI: 10.1096/fj.08-123513

Journal article

see the publication

The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes.

Adriana Granzotto, Fabrício R Lopes, Emmanuelle Lerat, Cristina Vieira, Claudia M A Carareto

BMC Evolutionary Biology . 9 : 174

DOI: 10.1186/1471-2148-9-174

Journal article

see the publication

Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance.

Jacques Oberto, Norman Breuil, Arnaud Hecker, Francesca Farina, Céline Brochier-Armanet, Emmanuel Culetto...

Nucleic Acids Research . : epub ahead of print

DOI: 10.1093/nar/gkp557

Journal article

see the publication

Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between Codons

Nicolas Rodrigue, Claudia L Kleinman, Hervé Philippe, Nicolas Lartillot

Molecular Biology and Evolution . 26 ( 7 ) : 1663 - 1676

DOI: 10.1093/molbev/msp078

Journal article

see the publication

In Retrospect: Lamarck's treatise at 200

Dan Graur, Manolo Gouy, David Wool

Nature . 460 ( 7256 ) : 688-689

DOI: 10.1038/460688a

Journal article

see the publication

A White Campion textit(Silene latifolia) floral expressed sequence tag (EST) library: annotation EST-SSR characterization transferability and utility for comparative mapping

Md. Moccia, C. Oger-Desfeux, Gabriel Marais, A. Widmer

BMC Genomics . 10(243) : 1-14

Journal article

see the publication

Silene as a model system in ecology and evolution

G. Bernasconi, J. Antonovics, A. Biere, D. Charlesworth, Lf. Delph, D. Filatov...

Heredity . 103 : 583-589

Journal article

see the publication

AcypiCyc (Acyrthosiphon pisum Cyc database) : a model database to visualize and study the metabolic network underlying the pea aphid-Buchnera symbiosis

Stefano Colella, Augusto Vellozo, Ludovic Cottret, Gérard Febvay, Federica Calevro, Yvan Rahbé...

6. International Symbiosis Society (ISS) Congress .

Conference paper

see the publication

AcypiCyc (Acyrthosiphon pisumCyc database) and CycADS (CycAnnotation Database System) : moving from genome sequence annotation to metabolic network analyses

Stefano Colella, Augusto Vellozo, Ludovic Cottret, Gérard Febvay, Federica Calevro, Yvan Rahbé...

8. International Symposium on Aphids (8 ISA 2009) .

Conference paper

see the publication

AcypiCyc (Acyrthosiphon pisumCyc database) and CycADS (CycAnnotation Database System) : moving from genome sequence annotation to metabolic network analyses

Stefano Colella, Augusto Vellozo, Ludovic Cottret, Gérard Febvay, Federica Calevro, Yvan Rahbé...

Réseau Français de Biologie Adaptative des Pucerons .

Conference paper

see the publication

CycADS: an annotation management system for the development and update of BioCyc metabolic network databases

A. Vellozo, Patrice Baa-Puyoulet, A. Veron, Jaime Huerta-Cepas, Ludovic Cottret, Gérard Febvay...

1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE .

Conference paper

see the publication

Differential retention of metabolic genes following whole-genome duplication

Jean-François Gout, Laurent Duret, Daniel Kahn

Molecular Biology and Evolution . 26 ( 5 ) : 1067-1072

DOI: 10.1093/molbev/msp026

Journal article

see the publication

Databases of Homologous Gene Families for Comparative Genomics

Simon Penel, Anne-Muriel Arigon Chifolleau, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, L. Duret...

BMC Bioinformatics . 10 (Suppl.6) :S3 : 13

DOI: 10.1186/1471-2105-10-S6-S3

Journal article

see the publication

A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics

Sabine Peres, Laurence Molina, Nicolas Salvetat, Claude Granier, Franck Molina

BMC Bioinformatics . 9 ( 1 ) : 460

DOI: 10.1186/1471-2105-9-460

Journal article

see the publication

Evolution of the mitochondrial ribosomal proteome

Elie Desmond-Le Quéméner, Celine Brochier-Armanet, Patrick Forterre, Simonetta Gribaldo

16th Annual Meeting of the Society of Molecular Biology and Evolution (SMBE'08) .

Poster

see the publication

Dynamic nature of the proximal AZFc region of the human Y chromosome: multiple independent deletion and duplication events revealed by microsatellite analysis.

Patricia Balaresque, Georgina Bowden, Emma Parkin, Ghada Omran, Evelyne Heyer, Lluis Quintana-Murci...

Human Mutation . 29 ( 10 ) : 1171-80

DOI: 10.1002/humu.20757

Journal article

see the publication

Transcription-Induced Mutational Strand Bias and Its Effect on Substitution Rates in Human Genes

Carina Mugal, Hans-Hennig von Grunberg, Martin Peifer

Molecular Biology and Evolution . 26 ( 1 ) : 131-142

DOI: 10.1093/molbev/msn245

Journal article

see the publication

Sex-specific genetic structure and social organization in Central Asia: insights from a multi-locus study.

Laure Ségurel, Begoña Martínez-Cruz, Lluis Quintana-Murci, Patricia Balaresque, Myriam Georges, Tatiana Hegay...

PLoS Genetics . 4 ( 9 ) : e1000200

DOI: 10.1371/journal.pgen.1000200

Journal article

see the publication

ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in Ribosome biogenesis.

Yohann Couté, Karine Kindbeiter, Stéphane Belin, Régis Dieckmann, L. Duret, Laurent Bezin...

Molecular and Cellular Proteomics . 7 : epub ahead of print

DOI: 10.1074/mcp.M700510-MCP200

Journal article

see the publication

Translational control of intron splicing in eukaryotes

Olivier Jaillon, Khaled Bouhouche, Jean-François Gout, Jean-Marc Aury, Benjamin Noel, Baptiste Saudemont...

Nature . 451 ( 7176 ) : 359-362

DOI: 10.1038/nature06495

Journal article

see the publication

Biased Gene Conversion and its Impact on Human Genome Evolution

N. Galtier, L. Duret

incollection . -- : 273-277

Journal article

see the publication

Enumerating precursor sets of target metabolites in a metabolic network

L. Cottret, P.V. Milreu, Vicente Acuna, A. Marchetti-Spaccamela, F. Viduani Martinez, M.F. Sagot...

WABI 2008 - 8th International Workshop on Algorithms in Bioinformatics . 5251 : 233-244

Conference paper

see the publication

Evolution des organismes bactériens

Guillaume Beslon, Federica Calevro, Hubert Charles, Jean-Michel Fayard, Carole Knibbe, Stéphane Génieys...

Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant" . : 12 diapos

Conference paper

see the publication

Benchmarking RNA secondary structure comparison algorithms

Julien Allali, Yves d'Aubenton-Carafa, Cedric Chauve, Alain Denise, Christine Drevet, Pascal Ferraro...

Actes des Journées Ouvertes de Biologie, Informatique et Mathématiques . : 67-68

Conference paper

see the publication