Pôles techniques

An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa

Djivan Prentout, Olga Razumova, Benedicte Rhone, Hélène Badouin, Hélène Henri, Cong Feng...

Genome Research . 30 ( 2 ) : 164-172

DOI: 10.1101/gr.251207.119

2020

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Revisiting giraffe photo-identification using deep learning and network analysis

Vincent Miele, Gaspard Dussert, Bruno Spataro, Simon Chamaillé-Jammes, Dominique Allainé, Christophe Bonenfant

DOI: 10.1101/2020.03.25.007377

2020

Pré-publication

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Epigenetic clock and DNA methylation studies of roe deer in the wild

Jean-François Lemaître Lemaître, Benjamin Rey, Jean-Michel Gaillard, Corinne Régis, Emmanuelle Gilot-Fromont, Maryline Pellerin...

DOI: 10.1101/2020.09.21.306613

2020

Pré-publication

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Under cover of the night: context-dependency of anthropogenic disturbance on stress levels of wild roe deer Capreolus capreolus

Jeffrey Carbillet, Benjamin Rey, Rupert Palme, Nicolas Morellet, Nadège Bonnot, Yannick Chaval...

Conservation Physiology . 8 ( 1 )

DOI: 10.1093/conphys/coaa086

2020

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Increased Diurnal Activity Is Indicative of Energy Deficit in a Nocturnal Mammal, the Aardvark

Nora Marie Weyer, Andrea Fuller, Anna Jean Haw, Leith Carl Rodney Meyer, Duncan Mitchell, Mike Picker...

Frontiers in Physiology . 11 : 637

DOI: 10.3389/fphys.2020.00637

2020

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A behavior-manipulating virus relative as a source of adaptive genes for Drosophila parasitoids

D Di Giovanni, D. Lepetit, B Guinet, B Bennetot, M. Boulesteix, Yohann Couté...

Molecular Biology and Evolution . 37 ( 10 ) : 2791-2807

DOI: 10.1093/molbev/msaa030

2020

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Studying genetic antagonisms as drivers of genome evolution

Mathieu Joron, Rylan Shearn, Alison E Wright, Sylvain Mousset, Corinne Régis, Simon Penel...

Peer Community In Evolutionary Biology .

DOI: 10.24072/pci.evolbiol.100108

2020

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Experimental evolution of virulence and associated traits in a Drosophila melanogaster - Wolbachia symbiosis

David Monnin, Natacha Kremer, Caroline Michaud, Manon Villa, Hélène Henri, Emmanuel Desouhant...

Peer Community In Evolutionary Biology . : e9

DOI: 10.24072/pcjournal.9

2020

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Drosophila suzukii oxidative stress response involves Jheh gene cluster but not transposable elements

Pierre Marin, Angelo Jacquet, Hélène Henri, Patricia Gibert, Cristina Vieira

2020

Pré-publication

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A transposon story : from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore

Mohamed Mourdas, Nguyet Thi-Minh Dang, Yuki Ogyama, Nelly Burlet, Bruno Mugat, Matthieu Boulesteix...

Cells . 9 ( 8 ) : 1776

DOI: 10.3390/cells9081776

2020

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No sex differences in adult telomere length across vertebrates: a meta-analysis

Florentin Remot, Victor Ronget, Hannah Froy, Benjamin Rey, Jean-Michel Gaillard, Daniel H Nussey...

Royal Society Open Science . 7 ( 11 ) : 200548

DOI: 10.1098/rsos.200548

2020

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Evolutions of Individuals Use of Lyon's Bike Sharing System

Jordan Cambe, Patrice Abry, Julien Barnier, Pierre Borgnat, Marie Vogel, Pablo Jensen

2019

Pré-publication

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IFB-Biosphère : Services cloud pour l'analyse des données des sciences de la vie

Christophe Blanchet, Olivier Collin, Matéo Boudet, Stéphane Delmotte, Hervé Gilquin, Jean-François Guillaume...

Journées RESeaux - JRES 2019 .

2019

Acte de congrès

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Does body growth impair immune function in a large herbivore?

Louise Cheynel, Frédéric Douhard, Emmanuelle Gilot-Fromont, Benjamin Rey, François Débias, Sylvia Pardonnet...

Oecologia . 189 ( 1 ) : 55-68

DOI: 10.1007/s00442-018-4310-4

2019

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Phenotypic plasticity in the invasive pest Drosophila suzukii: activity rhythms and gene expression in response to temperature

Christophe Plantamp, Hélène Henri, Thibault Andrieux, Corinne Régis, Gladys Mialdea, Stéphane Dray...

Journal of Experimental Biology . 222 : jeb199398

DOI: 10.1242/jeb.199398

2019

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Evolution of Hepatitis B Virus Receptor NTCP Reveals Differential Pathogenicities and Species Specificities of Hepadnaviruses in Primates, Rodents, and Bats

Stéphanie Jacquet, Jean-Baptiste Pons, Ariel de Bernardo, Barthélémy Ngoubangoye, Cosset François-Loïc, Corinne Régis...

Journal of Virology . 93 ( 5 )

DOI: 10.1128/JVI.01738-18

2019

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Pollen limitation as a main driver of fruiting dynamics in oak populations

Marie-Claude Bel-Venner, David Fouchet, Aurélie Siberchicot, Vincent Boulanger, Thomas Caignard, Michel Thibaudon...

Ecology Letters . 22 ( 1 ) : 98-107

DOI: 10.1111/ele.13171

2019

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Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

Marie Fablet, Angelo Jacquet, Rita Rebollo, Annabelle A. Haudry, Carine Rey, Judit Salces-Ortiz...

G3 . 9 ( 3 ) : 855-865

DOI: 10.1534/g3.118.200789

2019

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CAARS: comparative assembly and annotation of RNA-Seq data

Carine Rey, Philippe Veber, Bastien Boussau, Marie Sémon

Bioinformatics . 35 ( 13 ) : 2199-2207

DOI: 10.1093/bioinformatics/bty903

2019

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Detecting adaptive convergent amino acid evolution

Carine Rey, Vincent Lanore, Philippe Veber, Laurent Guéguen, Nicolas Lartillot, Marie Sémon...

Philosophical Transactions of the Royal Society B: Biological Sciences . 374 ( 1777 ) : 1-11

DOI: 10.1098/rstb.2018.0234

2019

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The neutrophil to lymphocyte ratio indexes individual variation in the behavioural stress response of wild roe deer across fluctuating environmental conditions

Jeffrey Carbillet, Benjamin Rey, Typhaine Lavabre, Yannick Chaval, Joel Merlet, Francois Débias...

Behavioral Ecology and Sociobiology . 73 ( 11 ) : 1-13

DOI: 10.1007/s00265-019-2755-z

2019

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questionr

Julien Barnier, François Briatte, Joseph Larmarange

2018

Logiciel

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rmdformats

Julien Barnier

2018

Logiciel

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explor

Julien Barnier

2018

Logiciel

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scatterD3

Julien Barnier

2018

Logiciel

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The ground plot counting method: A valid and reliable assessment tool for quantifying seed production in temperate oak forests?

Laura Touzot, Marie-Claude Bel-Venner, Marlène Gamelon, Stefano Focardi, Vincent Boulanger, Francois Débias...

Forest Ecology and Management . 430 : 143-149

DOI: 10.1016/j.foreco.2018.07.061

2018

Article dans une revue

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Stress levels of dominants reflect underlying conflicts with subordinates in a cooperatively breeding species.

Aurélie Cohas, Benjamin Rey, Valentine Federico, Corinne Regis, Sophie Lardy, Coraline Bichet

Behavioral Ecology and Sociobiology . 72 ( 4 ) : 72

DOI: 10.1007/s00265-018-2484-8

2018

Article dans une revue

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The influence of early‐life allocation to antlers on male performance during adulthood: Evidence from contrasted populations of a large herbivore

Jean-François Lemaître Lemaître, Louise Cheynel, Frédéric Douhard, G. Bourgoin, François Débias, Hubert Ferté...

Journal of Animal Ecology . 87 ( 4 ) : 921-932

DOI: 10.1111/1365-2656.12833

2018

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Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data

Ondine Filippi-Codaccioni, Marie-Pauline Beugin, Damien de Vienne, Elodie Portanier, David Fouchet, Cécile Kaerle...

BMC Evolutionary Biology . 18 ( 1 )

DOI: 10.1186/s12862-018-1289-8

2018

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Coexistence de deux espèces cryptiques de chauves-souris en Guyane française : apprentissages à partir de la génétique de l’acoustique et de l’écologie

Ondine Filippi-Codaccioni, Marie-Pauline Beugin, Damien M. de Vienne, Elodie Portanier, David Fouchet, Cécile Kaerle...

Plume de Naturalistes . 2 : 169-190

2018

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Pôles techniques

Pôle informatique

Pôle biotechnologique

Pôle administratif

Entretien des locaux

Publications

An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa

Revisiting giraffe photo-identification using deep learning and network analysis

Epigenetic clock and DNA methylation studies of roe deer in the wild

Under cover of the night: context-dependency of anthropogenic disturbance on stress levels of wild roe deer Capreolus capreolus

Increased Diurnal Activity Is Indicative of Energy Deficit in a Nocturnal Mammal, the Aardvark

A behavior-manipulating virus relative as a source of adaptive genes for Drosophila parasitoids

Studying genetic antagonisms as drivers of genome evolution

Experimental evolution of virulence and associated traits in a Drosophila melanogaster - Wolbachia symbiosis

Drosophila suzukii oxidative stress response involves Jheh gene cluster but not transposable elements

A transposon story : from TE content to TE dynamic invasion of Drosophila genomes using the single-molecule sequencing technology from Oxford Nanopore

No sex differences in adult telomere length across vertebrates: a meta-analysis

Evolutions of Individuals Use of Lyon's Bike Sharing System

IFB-Biosphère : Services cloud pour l'analyse des données des sciences de la vie

Does body growth impair immune function in a large herbivore?

Phenotypic plasticity in the invasive pest Drosophila suzukii: activity rhythms and gene expression in response to temperature

Evolution of Hepatitis B Virus Receptor NTCP Reveals Differential Pathogenicities and Species Specificities of Hepadnaviruses in Primates, Rodents, and Bats

Pollen limitation as a main driver of fruiting dynamics in oak populations

Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains

CAARS: comparative assembly and annotation of RNA-Seq data

Detecting adaptive convergent amino acid evolution

The neutrophil to lymphocyte ratio indexes individual variation in the behavioural stress response of wild roe deer across fluctuating environmental conditions

questionr

rmdformats

explor

scatterD3

The ground plot counting method: A valid and reliable assessment tool for quantifying seed production in temperate oak forests?

Stress levels of dominants reflect underlying conflicts with subordinates in a cooperatively breeding species.

The influence of early‐life allocation to antlers on male performance during adulthood: Evidence from contrasted populations of a large herbivore

Coexistence of two sympatric cryptic bat species in French Guiana: insights from genetic, acoustic and ecological data

Coexistence de deux espèces cryptiques de chauves-souris en Guyane française : apprentissages à partir de la génétique de l’acoustique et de l’écologie